rs261264565 SNP Detail

Summary

• ID
  rs261264565
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136377359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCTCCAG GCGCTCCATT
  GCAGCAGTTC CCTGGGCGCC CCCTCCCCCT CCGCGGGAAG GGCCTGCACA GGACTCGCGA
  GAGAGCGGGA GAGCGTGGGG GGAGCCCAGC TCCGGCTGCC GCGCGCCGCG GGGGCGGGGG
  GACCGGGGCC GCGTGGGGGC AGCTCCAGGC GGGGGACGAC CGGAGCCCCC GCTGCCGCCC
  Y
  GGGATTTCCC CGCAGGCCTG GAGCGACGCG AGCGGTGGCG ATCCTCTGTC GACCTCCCTT
  GCCACCCACG GCTGACTGCC GCCGACCTGT CATTGCTCTT AAAGGGTTCC CCGCTGGTGC
  ACACCTTTAG GGTGGGAAGC TCACCGTGCT CCCTTCCCCC AAGCTCCTAG CACCCCCTTG
  GTTACGGGCT ATTTGGTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss359865508	MGP_WTSI_3_136334562	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs261264565					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359865508	MGP_WTSI_3_136334562	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136377359 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13862	CpG island 13862	within coordinates
Gm56786	predicted gene, 56786	1654 bp upstream
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform	within coordinates
Rr398056	regulatory region 398056	1448 bp downstream
Rr398057	regulatory region 398057	496 bp downstream
Rr585834	regulatory region 585834	1686 bp distal
Rr585836	regulatory region 585836	1464 bp distal
Rr585837	regulatory region 585837	818 bp distal
Rr585838	regulatory region 585838	within coordinates
Tssr31863	transcription start site region 31863	1412 bp downstream
Tssr31864	transcription start site region 31864	1391 bp downstream
Tssr31865	transcription start site region 31865	1369 bp downstream
Tssr31866	transcription start site region 31866	1334 bp downstream
Tssr31867	transcription start site region 31867	1291 bp downstream
Tssr31868	transcription start site region 31868	1172 bp downstream
Tssr31869	transcription start site region 31869	1159 bp downstream
Tssr31870	transcription start site region 31870	1124 bp downstream
Tssr31871	transcription start site region 31871	1071 bp downstream
Tssr31872	transcription start site region 31872	1015 bp downstream
Tssr31873	transcription start site region 31873	996 bp downstream
Tssr31874	transcription start site region 31874	870 bp downstream
Tssr31875	transcription start site region 31875	774 bp downstream
Tssr31876	transcription start site region 31876	724 bp downstream
Tssr31877	transcription start site region 31877	1498 bp upstream
Tssr35849	transcription start site region 35849	1661 bp upstream