rs261272135 SNP Detail

Summary

• ID
  rs261272135
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23942806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTGCTGC CTTAAAAAAC
  ACAGTTCTCA TTTCAAATAG AATTAAGAGA TGTTTTACTT GAGAGCTAAA TATGAATGCT
  CATGGCCTAG GAACACAAAT TCAGATTCTT CCAAGTACTG TAGTTTGCTT TGGGAGTGTT
  CCATGACATT TTACTAGTTA TACTTGACTT TTTTTAATAT TATTGTTTTA GATGGTTTGC
  Y
  TACATGTATT TCTGTGCCTC TTTTATGATT GGTACTCAGA GACCAGCAGT GGGAACTGGG
  ACTCCTGGGA CTGCAGTTAC AAGAGATTTT GAGACACCAT GTGGGTGCGG GTGCGGGTGC
  GGGTGCTAGG AATCAAATGT AGGTCCTCTG GAAGAGCAGC CAGTGCTCTT AACCACCGAA
  CCATCTGTTC ACTCTTCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324291483	CHEV_13_23850692	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261272135					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23942806 () rs orientation: forward

Symbol	Name	Function Class
4930558J22Rik	RIKEN cDNA 4930558J22 gene	1185 bp upstream
Cpgi5375	CpG island 5375	1326 bp distal
Cpgi5376	CpG island 5376	1856 bp proximal
H4c1	H4 clustered histone 1	1972 bp downstream
H4c2	H4 clustered histone 2	1414 bp downstream
Rr388131	regulatory region 388131	965 bp downstream
Rr388132	regulatory region 388132	973 bp upstream
Rr475943	regulatory region 475943	1800 bp distal
Rr475944	regulatory region 475944	695 bp distal
Tssr118864	transcription start site region 118864	1828 bp downstream
Tssr121748	transcription start site region 121748	1194 bp upstream