rs261278401 SNP Detail

Summary

• ID
  rs261278401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:57172784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTCATTTA GAAGAATGCC ATGAGGATTA
  AATAAGATCA CACACAGACT GGCCTTCAGG CAGCTAGCAG GCATGTGAGG TAGATCTGTT
  ATCTAATTAG TGCTTCGATG TGTGTCTGTG GAAACGAACA AGCTCCTCCC CCCCCCCCCA
  Y
  CGGAACAAGT GATACCAACT GGGGAAAAAA AAACTACATT GAGCCTGTTA ATTTCAGTAC
  TCTGAAATAT GAAATTTCAT GAGCACCTGA ATAATATATA ATAACAATAA AAGCGCATTA
  TACATTTGGG TGTTTTCTTA GCAGTGTGCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325201085	CHEV_16_57352534	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261278401					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:57172784 () rs orientation: forward

Symbol	Name	Function Class
Cmss1	cms small ribosomal subunit 1	within coordinates
Filip1l	filamin A interacting protein 1-like	592 bp upstream
Tssr138825	transcription start site region 138825	350 bp upstream
Tssr138826	transcription start site region 138826	392 bp upstream
Tssr138827	transcription start site region 138827	561 bp upstream
Tssr138828	transcription start site region 138828	585 bp upstream
Tssr138829	transcription start site region 138829	681 bp upstream
Tssr138830	transcription start site region 138830	817 bp upstream
Tssr138831	transcription start site region 138831	850 bp upstream
Tssr138832	transcription start site region 138832	875 bp upstream
Tssr141600	transcription start site region 141600	1843 bp upstream
Tssr141601	transcription start site region 141601	711 bp downstream
Tssr141602	transcription start site region 141602	759 bp downstream