rs261278654 SNP Detail

Summary

• ID
  rs261278654
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:170672778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gtttaaaag taccttcttc acaaaatact
  ggcaactagc aaagggagaa aagagcagct tcttggctga gagcctagca gatgctgtca
  gctgactgag gtgaacatca ccagtaacag gacCACCTCA AACTGTCATC AAACTGAATC
  K
  TATCATCAAA AATAAATGAC AAGGTGgagt gtgggtggcc tgcacctgta acctcagttc
  ttgggaggtg aaagcaggag aatcaggagt tgaaggccat tttccattac atagcaactt
  taaaccagtt cgaactaggt gagatcctat                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320113906	CHEV_1_172775340	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261278654					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170672778 () rs orientation: forward

Symbol	Name	Function Class
Atf6	activating transcription factor 6	Intron
Rr423131	regulatory region 423131	530 bp distal
Rr423132	regulatory region 423132	627 bp distal
Rr423133	regulatory region 423133	208 bp proximal
Tssr14928	transcription start site region 14928	578 bp downstream