rs261289431 SNP Detail

Summary

• ID
  rs261289431
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:36919944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAACTGTA TTACTTGAGC
  CAATGAAGAG ATATGCGAAA GGAGAAAAAT AAAAGAGCCT TCATATTTTA TAAGACTGCA
  GGGCGACCGC GTAAGGCTAG GTTAGTGGCA GAAATGAAAG GGGATTAGGG AGACCGGGCT
  TCCGTTTAAT TTGCCTTTCG AAGCCCCTGC ACTGGGAGCC CACACAGTCA GCCATCTGTG
  Y
  ACACAGACGG AGAAAGGGAG AAAAGGGTGC AAAACTGGGG TCAGGTGACG GGCGGTGGAG
  GGACTGAGTA GGACCGCGAG GGTCTTGAGG CAACTAGAAG CTGAAAAGCG CGCACCGAGG
  GGACCCAAGC TTGCAGCCCT GCAGAACTGC AGAACCAGGG CAAGCTGCCA CGGCTGTAGG
  GGCGGAGCCA CGTCCCTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss388276821	MGP_WTSI_13_36827839	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs261289431					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388276821	MGP_WTSI_13_36827839	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36919944 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5451	CpG island 5451	515 bp distal
Cpgi5452	CpG island 5452	within coordinates
Gm56572	predicted gene, 56572	425 bp downstream
Nrn1	neuritin 1	1493 bp upstream
Rr477394	regulatory region 477394	1504 bp distal
Rr477395	regulatory region 477395	1072 bp distal
Rr477396	regulatory region 477396	within coordinates
Tssr119271	transcription start site region 119271	1103 bp downstream
Tssr122097	transcription start site region 122097	1695 bp upstream
Tssr122098	transcription start site region 122098	1662 bp upstream
Tssr122099	transcription start site region 122099	1585 bp upstream
Tssr122100	transcription start site region 122100	1555 bp upstream
Tssr122101	transcription start site region 122101	1523 bp upstream
Tssr122102	transcription start site region 122102	1478 bp upstream