rs261289981 SNP Detail

Summary

• ID
  rs261289981
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:58320023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAAACTT TATTTTTATC
  TCTTCTAAGT TACTAAGGTC CTAAACCATG TCCCCGTGCT CTGTGTTAAA TGAAGCCTTC
  TTGTGCTTTC CACTTGGCCA GTGATATATG ACTTAAGGGT TCACACTAGG CCTGACCTCA
  TACCCAGAGT GCTGATGCTA AGACCTAGAA AGTTACATAT TTGTGCAAAT TAGAAAAGAA
  Y
  ACCCCACTAG CTCCATGCAT GCCTGTGGGG ACCCAGTACC TATGGTTTTC AACCCATGTA
  GGCTTCAGCT GTGACTTTTT CCTTCATCAC CCCTCGAGTC CGTCCATGTC TGTGGCTCAC
  CTCTACATCC TGGTCCAGGA AGGCTGCTGA TCCCTGTGTC TATTCAGCCC TCTGCTAATC
  CTCAGCTCAC TTAACACTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396452188	MGP_WTSI_16_58499773	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261289981					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396452188	MGP_WTSI_16_58499773	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:58320023 () rs orientation: forward

Symbol	Name	Function Class
Rr404899	regulatory region 404899	963 bp downstream
Rr517409	regulatory region 517409	30 bp distal
Rr517410	regulatory region 517410	1987 bp proximal
St3gal6	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	within coordinates
Tssr4919	transcription start site region 4919	187 bp downstream
Tssr4920	transcription start site region 4920	213 bp downstream
Tssr138857	transcription start site region 138857	941 bp downstream
Tssr141615	transcription start site region 141615	313 bp upstream
Tssr141616	transcription start site region 141616	298 bp upstream
Tssr141617	transcription start site region 141617	258 bp upstream
Tssr141618	transcription start site region 141618	159 bp downstream