rs261299658 SNP Detail

Summary

• ID
  rs261299658
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69714124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTAGACC AGGAGGCTGG
  CCTCGAACTC AGAAATCCGC CTGCCTCTGC CTCCCGAGTG CTGGGATTAA AGGTGTGCGC
  CACCACACCC GGTTAATAAA TCTCATTTTT AAACCAACTC TGGGATAGTT AATTACTGTT
  GCAGGTACTT TGAAACTCAT GTCGTGCACA TTAGAAACTA GGTATGAAAG AACTGATTAT
  K
  TATGTATGTA TTTGTTTGCT TGTTTATTTT GAGACAGTGT CTGGTTATAT AACCCTAGTT
  GGCCTGGCTA TATGGTCCAG GCTGGTCTTG AATTCACAAT GATCTACCTG CCTCTGCCTC
  CCAAGTGCAG GAATTAAAGG AATGTTCCAG CATACCTGGC CTCTACTTTT AATCTTTTAA
  AAATTAGGTT TTGGGGCCGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354380348	MGP_WTSI_2_69721837	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261299658					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354380348	MGP_WTSI_2_69721837	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69714124 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11720	CpG island 11720	1453 bp proximal
Mettl5	methyltransferase 5, N6-adenosine	within coordinates
Mettl5os	methyltransferase 5, opposite strand	1902 bp upstream
Rr44276	regulatory region 44276	77 bp proximal
Rr50128	regulatory region 50128	524 bp distal
Rr56967	regulatory region 56967	476 bp proximal
Rr397023	regulatory region 397023	1105 bp upstream
Tssr24451	transcription start site region 24451	1777 bp downstream