rs261299864 SNP Detail

Summary

• ID
  rs261299864
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123154538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCCTCTG CAGGAGGCGC
  CCCTGGAGGC TGCAGGTTAG GCACCAGACC TTAACTCTAG GAATACCTTC AGGCTTGCCT
  GTCTTGGAGT TTGCCTGGAG CTGTTATTAT CTTTCGATGA CATCAACCTA CATCAGTGGG
  GTCTGCCGCC CCCCCCCTTC ACCATCACGG CCGCCTCCCC CCCCCCCCCC CCCCCCCCCG
  Y
  GAATTAGCTA AGCCTTTGGC CTTGAGGAAG GGAGTGGTTG GCACCCTTGG TTTTCTTGGG
  AAGGGAGTGT TGTCTGGGTC TCTCCCTGTC GCCTGCAAAC AAGTGGATCA ACACAGTTGT
  GAGCCCGGAT GCTTTAGAAG CCCACAGTGC ACTAGGCCAG AGAGGAAAGG CCAGGAGGTG
  TGATATAAAT TACCCTTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss366530711	MGP_WTSI_5_123466484	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs261299864					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366530711	MGP_WTSI_5_123466484	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123154538 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16567	CpG island 16567	575 bp distal
Gm2479	predicted gene 2479	1521 bp upstream
Orai1	ORAI calcium release-activated calcium modulator 1	within coordinates
Rr399336	regulatory region 399336	1391 bp downstream
Rr620047	regulatory region 620047	1391 bp distal
Rr620048	regulatory region 620048	1058 bp distal
Rr620049	regulatory region 620049	1124 bp proximal
Tssr48743	transcription start site region 48743	1357 bp downstream
Tssr48744	transcription start site region 48744	1322 bp downstream
Tssr48745	transcription start site region 48745	1176 bp downstream
Tssr48746	transcription start site region 48746	1140 bp downstream
Tssr48747	transcription start site region 48747	235 bp downstream
Tssr53183	transcription start site region 53183	1612 bp upstream
Tssr53184	transcription start site region 53184	565 bp upstream
Tssr53185	transcription start site region 53185	518 bp upstream
Tssr53186	transcription start site region 53186	495 bp upstream
Tssr53187	transcription start site region 53187	1082 bp downstream