rs261307641 SNP Detail

Summary

• ID
  rs261307641
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:100427404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAGTGCT CTGTGTGTAG
  GGTGGGCGGA AGTCAGGGCG TTTGATCTGA ATTCTAAAGG GTGTTGTTCA GCGCCCCACA
  AAGGTCCCAT TGTACAGACA CTGGGTATAA AGCAGCATAT GACTCTCTAG CACCGGGAGG
  CGATGAATTG GGACGCAGGC GCGACCACAG GGACCACTCC CCCTACACAG ACATGAGACC
  R
  TAGGGGAGCT GTCTGGGTGG CCTCAAGGAT AGGCGCTCCC CGAGGTAACC GGGCTATCTG
  GGTTTGCCAT AAGTCAGGTG TAAAGGAGCT GGGGCGGGGT GGTGGTGGTG GTGCACGAAG
  AACAGGCTAA TAGCAGAACA AGATAGGCCT GGTGAAGAAA GGGACTCAAG AGGAGCGAAT
  GCTGGATGTA TGTGAAGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404178814	MGP_WTSI_X_98579137	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261307641					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404178814	MGP_WTSI_X_98579137	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:100427404 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22867	CpG island 22867	867 bp proximal
Gjb1	gap junction protein, beta 1	within coordinates
Tssr161658	transcription start site region 161658	57 bp downstream
Tssr161659	transcription start site region 161659	21 bp downstream
Tssr161660	transcription start site region 161660	within coordinates
Tssr161661	transcription start site region 161661	498 bp upstream
Tssr161662	transcription start site region 161662	645 bp upstream
Tssr161663	transcription start site region 161663	692 bp upstream
Tssr161664	transcription start site region 161664	832 bp upstream
Tssr161665	transcription start site region 161665	1062 bp upstream
Tssr163884	transcription start site region 163884	846 bp downstream