rs261310130 SNP Detail

Summary

• ID
  rs261310130
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101900685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGACTAAA CGAGTGTTCT
  CAGATTCCAG AAGCCTGTTC TCATCGCACA GGCAGTTTGT GGACCCCTTA CTTCTTCTTT
  GGCCCTTAGG CAAATTCCTC CCAATGGGAA GAGAATAAAT TGGAGGGGCT AGGGGAAATT
  TGGGAGGGCA GAACTAGTGT TTGGTATTTA ATGGGAAGAG GTTTGTGAGT CCCAAAAATA
  W
  CAGGGTCCTT AAGTGAGGTT TGTAAATCCC CAAAATAACA GGATCAGATT CAAGTGACTT
  CAATGAAGCT ATTAAAAATA CGTTCCAAGC CAGGTGTGGT AGCACGTTTG TAATCTCAGC
  ATTCCAGAGG TGGAGGCAGG AGGTTCAGAA GTTCGAGGCC AGCCTGGACT ATATAAGACC
  TTACCTACCT TAATAAATAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353672	CHEV_7_109399992	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261310130					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101900685 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	494 bp distal
Rhog	ras homolog family member G	1360 bp upstream
Rr652562	regulatory region 652562	1401 bp distal
Rr652563	regulatory region 652563	865 bp distal
Rr652564	regulatory region 652564	536 bp distal
Tssr2354	transcription start site region 2354	1202 bp downstream
Tssr68328	transcription start site region 68328	1785 bp downstream
Tssr68329	transcription start site region 68329	1764 bp downstream
Tssr68330	transcription start site region 68330	1223 bp downstream
Tssr73942	transcription start site region 73942	1919 bp upstream
Tssr73943	transcription start site region 73943	1392 bp upstream
Tssr73944	transcription start site region 73944	1355 bp upstream
Tssr73945	transcription start site region 73945	1340 bp upstream
Tssr73946	transcription start site region 73946	1144 bp upstream
Tssr73947	transcription start site region 73947	999 bp upstream
Tssr73948	transcription start site region 73948	963 bp upstream
Tssr73949	transcription start site region 73949	930 bp upstream
Tssr73950	transcription start site region 73950	883 bp upstream