rs261319988 SNP Detail

Summary

• ID
  rs261319988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:48530869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGAGGGAA GGATTCCCTA
  GGTGCCGAAA TCACCGCGAT GCCAAAGCGC ACCGTACGCT GCGCTCCCGG TCCCAGGTAC
  AGTCCCCAGC AGTAGCCCGC GTCCCGCCCG GCGCAAGCAC TGGCTCCTCC TCCCCGCCAA
  CTGCACCGCC CCCGGGGGCA GCCAGACAGC ATCTCACGGT TTCCAGGGCG ACGGCTCCGA
  R
  CCAATCAGTA AGCCCGGTGA AGGCCTGCGA TTGGCTAGAG GTCCCCAAGG CGGGGCCGGA
  CCTTCCGCCT TCGATTTAAA AATTTGGCGC GGAAAGCGGG ACCGTAGCTG GCACCGCCCC
  CGAGTGCGCG GGGCTGGAGC GCGGGCGAGC CCCTCCCCCG CCCTCTGCGC GGGAGCTCGG
  CTCCTCCCCA CGGGCCCCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371266120	MGP_WTSI_7_56136491	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261319988					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371266120	MGP_WTSI_7_56136491	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48530869 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19137	CpG island 19137	within coordinates
E2f8	E2F transcription factor 8	Intron
Gm2788	predicted gene 2788	within coordinates
Rr400335	regulatory region 400335	within coordinates
Rr400336	regulatory region 400336	528 bp upstream
Rr646935	regulatory region 646935	1741 bp distal
Rr646936	regulatory region 646936	1234 bp distal
Rr646937	regulatory region 646937	91 bp distal
Rr646938	regulatory region 646938	within coordinates
Rr646939	regulatory region 646939	264 bp proximal
Rr646940	regulatory region 646940	465 bp proximal
Tssr66768	transcription start site region 66768	211 bp upstream
Tssr66769	transcription start site region 66769	743 bp upstream
Tssr72630	transcription start site region 72630	131 bp upstream
Tssr72631	transcription start site region 72631	91 bp upstream
Tssr72632	transcription start site region 72632	71 bp upstream
Tssr72633	transcription start site region 72633	483 bp downstream
Tssr72634	transcription start site region 72634	520 bp downstream
Tssr72635	transcription start site region 72635	1230 bp downstream