rs261320946 SNP Detail

Summary

• ID
  rs261320946
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:63216151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGAGGAAG CGGAGAAGAC
  GACTTGGACC TGCAGTTCCG CCGGAAGTAG CCGAGGCCTT GCGTCCGAGC GCTTTCGTTC
  AACTCCGGCT CCTCAGAGGG CGTTTCCCTT CGTTTCGGAG TCCTTGGAGC GAAGGCATTT
  TAAAATGCCT CCTTTATTAA TTTTCTTCCA AAGACAAGGG AAGGCCGGCG GACGACCTGT
  R
  GGCCCTTTAG TTACCAAGTC GCAGTGGTAC GCGGAGGACC GAGACTAGGA ACGGACCTTG
  ACCTTTAACC TCTAGCCGGG GCGGCGGAGG GAAACGCCTC CGTCTCTATA TAAGGAGTTT
  TCCGGACGCT CTGGGTCCTT TTTTTCCCTC AGCGCTGGCC GCGGCCTCCC GGCGCTCTCG
  TCCTCCGCTT TTGCACAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349860576	MGP_WTSI_1_63223566	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261320946					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349860576	MGP_WTSI_1_63223566	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63216151 () rs orientation: forward

Symbol	Name	Function Class
Cpgi313	CpG island 313	within coordinates
Eef1b2	eukaryotic translation elongation factor 1 beta 2	within coordinates
Gm26457	predicted gene, 26457	1685 bp upstream
Gm56065	predicted gene, 56065	991 bp upstream
Ndufs1	NADH:ubiquinone oxidoreductase core subunit S1	170 bp upstream
Rr29527	regulatory region 29527	within coordinates
Rr396073	regulatory region 396073	70 bp downstream
Tssr7054	transcription start site region 7054	73 bp downstream
Tssr7055	transcription start site region 7055	59 bp upstream
Tssr7056	transcription start site region 7056	99 bp upstream
Tssr7057	transcription start site region 7057	127 bp upstream
Tssr7058	transcription start site region 7058	754 bp upstream
Tssr7059	transcription start site region 7059	1468 bp upstream
Tssr11882	transcription start site region 11882	285 bp upstream
Tssr11883	transcription start site region 11883	175 bp upstream
Tssr11884	transcription start site region 11884	1866 bp downstream