rs261322386 SNP Detail

Summary

• ID
  rs261322386
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55207631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCTTGCC ACACCTAGGG
  CCAAACTCTA TCTTCCAGCA GCTGCAGAGG TCAAAAGCCT TGCAAATGGA AGTCACAGAG
  GGGACGTGAA GGAAGAAATG AATACTGCAG ACCAGGGGGT GTGTCCTGGG AGGATGGGGA
  GGAAGAAAGA TAGGCTAAGG TTACTGTCCT CCTGGCTAAG TGGAAGGGGC AAGGGACACT
  R
  TGGATAGCTG TGTTTGGAAT GTCACTTGAC TACATCTCTC ATCCCGTGTC CTCTCAGAGA
  CCTGCCTGGG ATGGGATCTA AGGGGACATT ACTACATCTG CTGAGGGGGT CATACCTTTG
  CCGACTGAAA AGTCACTGGT CAGTTCCTAC ACCCCAGGAC TTCTGTGGCC CAGCTCTGCA
  TATTATCAGC GTAGGATACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391147643	MGP_WTSI_14_55589011	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261322386					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391147643	MGP_WTSI_14_55589011	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55207631 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	within coordinates
Myh7	myosin, heavy polypeptide 7, cardiac muscle, beta	510 bp downstream
Rr492380	regulatory region 492380	1369 bp distal
Rr492381	regulatory region 492381	13 bp distal
Tssr125718	transcription start site region 125718	1491 bp downstream
Tssr125719	transcription start site region 125719	1399 bp downstream
Tssr125720	transcription start site region 125720	1374 bp downstream
Tssr125721	transcription start site region 125721	1362 bp downstream
Tssr125722	transcription start site region 125722	914 bp downstream
Tssr125723	transcription start site region 125723	872 bp downstream
Tssr125724	transcription start site region 125724	832 bp downstream
Tssr125725	transcription start site region 125725	within coordinates
Tssr125726	transcription start site region 125726	18 bp upstream
Tssr125727	transcription start site region 125727	51 bp upstream
Tssr125728	transcription start site region 125728	859 bp upstream
Tssr125729	transcription start site region 125729	1733 bp upstream
Tssr128753	transcription start site region 128753	1814 bp upstream
Tssr128754	transcription start site region 128754	1744 bp upstream
Tssr128755	transcription start site region 128755	541 bp downstream
Tssr128756	transcription start site region 128756	558 bp downstream