rs261329058 SNP Detail

Summary

• ID
  rs261329058
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55885649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCAAGCA AAGAGGTAGA
  AAATGAAGAA GTCCTACTTT TTTGTTGGCC TTAAGCCCTT CTAGCTCTTG TTTAGGTTGA
  TTCCTTGGGG GAGGGGGGCG GGTAAGGGGG ATTAACTTGC ACCATGTATT AACAGATCGC
  TTAAAGACCT CCACTCTAAA AACAGTCCTG TGGCCTTGGA GATAAACAGC TGGCCAGTCC
  S
  GCAGTCCATG CAATAGAGGA AAAACGCCTT CATTAATATT AGGTGTCCTG AGTCTAGGGT
  ACCAAATCTT GGCCACTAGT CTTGCTTTTA AGCCAGACAA ACCTAGGATG GTTTTCTAAC
  TGTTTGCAGA CTAGAGCTGT GTGTTTGCTT TTGAAGAGCA TGAGATGATT CTGGAGTTGA
  GTCCGTTAGA CATTCTGCCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402852448	MGP_WTSI_19_55971707	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261329058					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402852448	MGP_WTSI_19_55971707	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55885649 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11085	CpG island 11085	1448 bp distal
Rr363576	regulatory region 363576	within coordinates
Tcf7l2	transcription factor 7 like 2, T cell specific, HMG box	within coordinates
Tssr157133	transcription start site region 157133	1993 bp downstream
Tssr157134	transcription start site region 157134	1803 bp downstream
Tssr157135	transcription start site region 157135	1763 bp downstream
Tssr157136	transcription start site region 157136	1734 bp downstream
Tssr157137	transcription start site region 157137	1720 bp downstream
Tssr157138	transcription start site region 157138	1706 bp downstream
Tssr157139	transcription start site region 157139	1651 bp downstream
Tssr157140	transcription start site region 157140	1636 bp downstream
Tssr157141	transcription start site region 157141	1626 bp downstream
Tssr157142	transcription start site region 157142	797 bp downstream
Tssr157143	transcription start site region 157143	696 bp upstream
Tssr157144	transcription start site region 157144	724 bp upstream
Tssr157145	transcription start site region 157145	734 bp upstream
Tssr157146	transcription start site region 157146	1046 bp upstream
Tssr157147	transcription start site region 157147	1060 bp upstream
Tssr157148	transcription start site region 157148	1379 bp upstream
Tssr157149	transcription start site region 157149	1728 bp upstream