rs261334398 SNP Detail

Summary

• ID
  rs261334398
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77356029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGTGCCAG CCCCTGGTAA
  GGGACACTCA GCACCAAGAC TGCGTGCTGC CTATGACTCC AAGGTGAAAC CAAGGGAGAG
  GTCTGCCCCA GGGGCTAAGC CACTGCCGTC AGAGTCACTC ACTCAGACCT CTCTCTCCAG
  GGGCTTGCCA AAGGTCCTCC AACTTGGGGG ACAGGTTCAA GCACATCCTC CTCACAGGGC
  R
  TGTGGGTTCA CGCCCATGAG CCCAGCACTG GGAAGACCGA GGCAAGATCA GCCTAGGCTA
  ATCAACATAA TGAGACCTTA ACTTGAGTCT GGGTTCCGTG TCCTGCTGTG GGTACTTTGT
  TAGGTCAGCC TGTCTCTCTG AATCAGACTT CCTAATACAA AGGCATTCAC ACTGTGCATC
  TCCAGCAAAG TTCAAAGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323755240	CHEV_11_77278705	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261334398					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77356029 () rs orientation: forward

Symbol	Name	Function Class
Coro6	coronin 6	within coordinates
Cpgi3305	CpG island 3305	1982 bp distal
Cpgi3306	CpG island 3306	1732 bp proximal
Rr247229	regulatory region 247229	1228 bp distal
Rr247230	regulatory region 247230	1771 bp proximal