rs261339392 SNP Detail

Summary

• ID
  rs261339392
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:103062768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGGGCT GGCGCCCACT
  TTTCCACTGC ACGCAGGCCC AGCGGCTGGG TGCAAGTCTG GAGCGCTTTG CCCTTCTGCG
  TCTCAGGGTC AAAGAGGAAA GGGGTTATAA TTTAACCTTC TGGAAGCTGT AGACCTAGTG
  GAGCCTTCAG TCCTGGGTTG TTCTGGTGTC TGGCGTAGGA GTTGGACTCT TAGACCCTCC
  R
  CTTGTATTTA TCACCCCCAC CATGTCCCGG AATGGGTGTT TGCAGTCATT CCCTCATCAT
  GGACCACCCC CAACCACTGA AAGGAGTAAG CTTAGGAAGG GTGGGGCCAG GATAGGCTGG
  TCATTCTGGC TTGGAGTGGA ACAGAAATCT GGAAGGCTCC CCTCCCTCTT GGCTGTCACT
  TGCTTGGGAA ACTGGGGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384517820	MGP_WTSI_11_103033256	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261339392					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384517820	MGP_WTSI_11_103033256	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:103062768 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3957	CpG island 3957	149 bp distal
Fmnl1	formin-like 1	within coordinates
Gm51919	predicted gene, 51919	1432 bp upstream
Rr457538	regulatory region 457538	1680 bp distal
Rr457539	regulatory region 457539	619 bp distal
Rr457540	regulatory region 457540	1004 bp distal
Rr457541	regulatory region 457541	within coordinates
Rr457542	regulatory region 457542	1169 bp proximal
Rr457543	regulatory region 457543	1446 bp proximal
Tssr105316	transcription start site region 105316	1515 bp downstream
Tssr105317	transcription start site region 105317	1446 bp downstream
Tssr105318	transcription start site region 105318	1202 bp downstream
Tssr105319	transcription start site region 105319	1112 bp downstream
Tssr105320	transcription start site region 105320	1081 bp downstream
Tssr105321	transcription start site region 105321	964 bp downstream
Tssr105322	transcription start site region 105322	933 bp downstream
Tssr105323	transcription start site region 105323	820 bp downstream