rs261339537 SNP Detail

Summary

• ID
  rs261339537
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80641565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCACCTT CGGAGTCTGC
  AGCACTGACT CCCAGGCTAC CCTGCCTGCC CTGCAGCGCC TTGGGGCCTG GCTAGGGGAG
  ACTGGAGAAC AGCAGTTGCT AGTCCTACAT CTGGCTGAAG GTACGTGATG GACTCTGTCT
  CAGCGCCCAT GATGCCTTGG GACTGAGTGA GTTAGGGCAG AAGCTGGGGG AGGGGGGTTT
  K
  GGGGAGGGGG CCTCGCTGGA TTGCTAGGCA GAACCTTATA CACCCTTTCA GGAACTGTAG
  TGGGCAAGAT GGCAGGACAC ACCCCAATGA TCACACCTTC CAGACAGATG ACAGCAGAGC
  TGCTGTGTCC TTACAAGCAA GGTCTCCACA CCTTGGATCA GGGTCCCTCA GGCCTACATG
  GCCCCAGAAG ATCTCCAGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381025299	MGP_WTSI_10_80268476	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261339537					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381025299	MGP_WTSI_10_80268476	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80641565 () rs orientation: forward

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	within coordinates
Cpgi1909	CpG island 1909	647 bp proximal
Rr366747	regulatory region 366747	449 bp downstream
Rr435397	regulatory region 435397	1063 bp distal
Rr435398	regulatory region 435398	330 bp proximal
Rr435399	regulatory region 435399	1367 bp proximal
Sf3a2	splicing factor 3a, subunit 2	809 bp downstream
Tssr94618	transcription start site region 94618	1668 bp downstream
Tssr94619	transcription start site region 94619	1641 bp downstream
Tssr94620	transcription start site region 94620	1613 bp downstream
Tssr94621	transcription start site region 94621	1581 bp downstream
Tssr94622	transcription start site region 94622	1504 bp downstream
Tssr94623	transcription start site region 94623	991 bp downstream
Tssr94624	transcription start site region 94624	482 bp downstream
Tssr94625	transcription start site region 94625	397 bp upstream
Tssr94626	transcription start site region 94626	668 bp upstream
Tssr94627	transcription start site region 94627	1099 bp upstream
Tssr94628	transcription start site region 94628	1944 bp upstream
Tssr98515	transcription start site region 98515	1660 bp upstream
Tssr98516	transcription start site region 98516	1902 bp downstream