rs261342120 SNP Detail

Summary

• ID
  rs261342120
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108818196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTTAACG AAGAGCACGA
  GGCCGACATT GAAGTAATTA CTTCAGTAAT TCCGCTGGCC CGGGGGGCAG CGGCAGAAGC
  ACCGAGTTAG TGCTTAGTCG ACACAGGTAA AAAGGAGTCA TTTTTTTAAA AAATGGTGAA
  CTTGGACAGG CTTCTGGTAT TACTTTTCTC CTCTCCCCTA GAGTTCTTGC CCAACAGCTC
  Y
  CTAGGGATAG GCAGGAGGTT GGGGTAGGTT AAAGATCGAT TGTGGCGGGC TCGCCCGGCT
  ATTAAAACAA AACAAAAAAA ACAAAACCTG AAAAGGAAAA AAAGAGGGCG GCCCTAGCCC
  GACCCGTCCC AAACCAGCCC CAAGCTTCAC TTCTCCCTCC GCCAACTTTC CCCCTCCCCC
  AAATCCGCGG GTCTCAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359176083	MGP_WTSI_3_108713798	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261342120					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359176083	MGP_WTSI_3_108713798	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108818196 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13711	CpG island 13711	within coordinates
Gm56806	predicted gene, 56806	602 bp upstream
Prpf38b	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	within coordinates
Rr397945	regulatory region 397945	689 bp upstream
Rr583344	regulatory region 583344	94 bp proximal
Rr583345	regulatory region 583345	112 bp proximal
Rr583346	regulatory region 583346	298 bp proximal
Rr583347	regulatory region 583347	613 bp proximal
Rr583348	regulatory region 583348	837 bp proximal
Tssr31269	transcription start site region 31269	926 bp upstream
Tssr31270	transcription start site region 31270	948 bp upstream
Tssr31271	transcription start site region 31271	1533 bp upstream
Tssr35202	transcription start site region 35202	572 bp downstream
Tssr35203	transcription start site region 35203	790 bp downstream
Tssr35204	transcription start site region 35204	807 bp downstream