rs261346065 SNP Detail

Summary

• ID
  rs261346065
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45342515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGTCCCCAG GGGTGGGGGT TCCCTCGGAC
  ACCAAGTTTG TTCTTCAGAC CCAAGAGTCG CCATCACCTA TGTCTCACCC CTGTACCCCA
  GGCGCTGGCT CCGGCTTCTC TGCGTCTCCC TGACCACCTT AGGCAGCGCG CCCCAAGGTG
  M
  AAGACTCTCC GCTCCGGCGC TTGGCCTGCT GGACCTGGGG ACAAGTGTTC AGACTGGGGG
  GCGTGTCCCT TTCCCGGGAG AGAAAAGGTT GCTAGGGGTG GGTCCAGGTG TCCGGCATGT
  CCAGACCTGC TCCCGGGGTT CCGTGCACCT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322943360	CHEV_9_45239300	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261346065					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45342515 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4833428L15Rik	RIKEN cDNA 4833428L15 gene			within coordinates
Dscaml1	DS cell adhesion molecule like 1			Intron
				Noncoding-Transcript-Variant
Rr383299	regulatory region 383299			within coordinates
Rr677921	regulatory region 677921			914 bp distal
Rr677922	regulatory region 677922			5 bp proximal
Rr677923	regulatory region 677923			853 bp proximal
Tssr84800	transcription start site region 84800			838 bp downstream
Tssr84801	transcription start site region 84801			112 bp upstream
Tssr84802	transcription start site region 84802			140 bp upstream