rs261346511 SNP Detail

Summary

• ID
  rs261346511
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127032828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCCACAG AGCTGGTACC
  CCAAGAGGCC CACTAAAGTT AACAGATGGA GGAGCAAGAG CATAATGAAG ACAGACACAC
  CATCCCACTC CCACTCTGGC CGCCACAAGG TTGGCGACTA TTTTCCCGCT CCCATGTCCA
  CCCCACAACT CCAAGTCCAC AGTCATCTTA GAACACCCCC CCCCCACACA CACACACACA
  T
  ACTCAGGAGC CCAACACCTT GAAGACCAAT ATTTTTCAGT TGGACTCTGT AACTCTTAAA
  CATAGGATGG GTTACTCAGT TTTTTAAAAA ACAAAAACTT CTGTGAATGA CTTAGATCAA
  ATAATTTATT TTATTGTGAT ATCGGGAGTA AATATACATA TTTTATTAAC AAAACAGATG
  GAAAACGGAA GCAGTAAGTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382180361	MGP_WTSI_10_126634015	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261346511					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382180361	MGP_WTSI_10_126634015	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127032828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2345	CpG island 2345	1192 bp distal
Dtx3	deltex 3, E3 ubiquitin ligase	1231 bp upstream
F420014N23Rik	RIKEN cDNA F420014N23 gene	within coordinates
Gm57007	predicted gene, 57007	within coordinates
Pip4k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	108 bp downstream
Rr224404	regulatory region 224404	27 bp distal
Tssr96170	transcription start site region 96170	1661 bp downstream
Tssr99736	transcription start site region 99736	1737 bp upstream
Tssr99737	transcription start site region 99737	1220 bp upstream