rs261348968 SNP Detail

Summary

• ID
  rs261348968
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:69556690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATCTTGG ACTAGTAGCA
  GTGCCATTTG TGGTGGGAGA AACTGTGGCA TGAGAAATTG TGGCATTCCC ATGACTGGTG
  GTGGTGGCAG GGTTATGAGT GACAGTTGTG GGTCCGGAGC TGGTGTGAAC TGTGACATTT
  CCGTGACTGG TGGTGGTGGG CCTGTGGCTG GTCGTAGGGC TGGCTGTGCT TTCTGTGGCT
  R
  TAGGTGTCAT CGTGAAGGAT GGCAGGAGAG TAACGGCCTT TTTGTGAGGA CAGTCTTCCT
  CTGTTCCTTG GGCTTTCAGT AAGAGATTGG TTGGCCACCC AGGTGCAGGC TCCTGCCCAT
  GAGCCCTCCC TCCCCCACCT CCCATTTCTC CTTACCTATA AGCGGTCCTA GCAAGATCAG
  ACACACAGGG AGCCGCATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383788473	MGP_WTSI_11_69479366	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261348968					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383788473	MGP_WTSI_11_69479366	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69556690 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd68	CD68 antigen			Coding-NonSynonymous
				Intron
				Noncoding-Transcript-Variant
Eif4a1	eukaryotic translation initiation factor 4A1			1072 bp downstream
Gm24029	predicted gene, 24029			1970 bp downstream
Gm73992	predicted gene, 73992			within coordinates
Rr450060	regulatory region 450060			1685 bp distal
Rr450061	regulatory region 450061			188 bp proximal
Tssr102508	transcription start site region 102508			1680 bp downstream
Tssr102509	transcription start site region 102509			1645 bp downstream
Tssr102510	transcription start site region 102510			1511 bp downstream
Tssr102511	transcription start site region 102511			1476 bp downstream
Tssr102512	transcription start site region 102512			228 bp downstream
Tssr102513	transcription start site region 102513			190 bp downstream
Tssr102514	transcription start site region 102514			160 bp downstream
Tssr102515	transcription start site region 102515			22 bp downstream
Tssr102516	transcription start site region 102516			608 bp upstream
Tssr102517	transcription start site region 102517			638 bp upstream
Tssr108748	transcription start site region 108748			1482 bp upstream
Tssr108749	transcription start site region 108749			1405 bp upstream
Tssr108750	transcription start site region 108750			1376 bp upstream
Tssr108751	transcription start site region 108751			1347 bp upstream
Tssr108752	transcription start site region 108752			934 bp upstream
Tssr108753	transcription start site region 108753			744 bp upstream
Tssr108754	transcription start site region 108754			544 bp upstream
Tssr108755	transcription start site region 108755			499 bp upstream
Tssr108756	transcription start site region 108756			469 bp upstream
Tssr108757	transcription start site region 108757			278 bp upstream
Tssr108758	transcription start site region 108758			39 bp upstream
Tssr108759	transcription start site region 108759			21 bp upstream
Tssr108760	transcription start site region 108760			28 bp downstream
Tssr108761	transcription start site region 108761			201 bp downstream
Tssr108762	transcription start site region 108762			214 bp downstream
Tssr108763	transcription start site region 108763			298 bp downstream
Tssr108764	transcription start site region 108764			1361 bp downstream
Tssr108765	transcription start site region 108765			1506 bp downstream