rs261376916 SNP Detail

Summary

• ID
  rs261376916
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:82602272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAGGCGG TGTGACAAAT
  CGAGGGAATA TTCTGTGTCC TGGGATATCA CTTCCCGCCG GAACAGCTTG TGATTGGACA
  ACCACAGAAC CAGCACTGTG GAGGGGAAGT GTCGCCCCGC AGCTACACAG GCTTGTGCCT
  AACTCCTGTC TTTTCTTTTT CCCAGGGAGG AAGAGACAGC CGCTCTGGAT CTCCCATGGC
  K
  AGACGCTGAG AGCCCTCCCC GCTCAGCCTT CCCGAATCCT GCCCTCGGCT TCTTAATATA
  ACTGCCTTAA ACTTTTAATT CTACTTGCAC CGATTAGCTA GTTAGAGCAG ACCCTCTCTT
  AATCCCGTGG AGCCGTGATC GCGGTGGGGC CAGGCCCACG GCACCCCGAC TGGTTAAAAC
  TATTCGTCCC TTTTCGTTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401436733	MGP_WTSI_18_82753539	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261376916					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401436733	MGP_WTSI_18_82753539	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82602272 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm58829	predicted gene, 58829			475 bp downstream
Mbp	myelin basic protein			Coding-Synonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr541827	regulatory region 541827			12 bp distal
Tssr152152	transcription start site region 152152			22 bp downstream
Tssr152153	transcription start site region 152153			within coordinates
Tssr152154	transcription start site region 152154			103 bp upstream
Tssr152155	transcription start site region 152155			141 bp upstream
Tssr152156	transcription start site region 152156			214 bp upstream
Tssr152157	transcription start site region 152157			265 bp upstream
Tssr152158	transcription start site region 152158			322 bp upstream
Tssr152159	transcription start site region 152159			352 bp upstream
Tssr152160	transcription start site region 152160			402 bp upstream
Tssr152161	transcription start site region 152161			419 bp upstream
Tssr152162	transcription start site region 152162			435 bp upstream
Tssr152163	transcription start site region 152163			460 bp upstream
Tssr152164	transcription start site region 152164			500 bp upstream
Tssr152165	transcription start site region 152165			553 bp upstream
Tssr152166	transcription start site region 152166			619 bp upstream
Tssr152167	transcription start site region 152167			634 bp upstream
Tssr152168	transcription start site region 152168			669 bp upstream
Tssr152169	transcription start site region 152169			730 bp upstream
Tssr152170	transcription start site region 152170			811 bp upstream
Tssr152171	transcription start site region 152171			871 bp upstream
Tssr152172	transcription start site region 152172			978 bp upstream
Tssr152173	transcription start site region 152173			1001 bp upstream
Tssr152174	transcription start site region 152174			1019 bp upstream
Tssr152175	transcription start site region 152175			1042 bp upstream
Tssr152176	transcription start site region 152176			1251 bp upstream
Tssr152177	transcription start site region 152177			1419 bp upstream
Tssr154083	transcription start site region 154083			70 bp downstream
Tssr154084	transcription start site region 154084			94 bp downstream
Tssr154085	transcription start site region 154085			366 bp downstream
Tssr154086	transcription start site region 154086			921 bp downstream
Tssr154087	transcription start site region 154087			1136 bp downstream
Tssr154088	transcription start site region 154088			1176 bp downstream
Tssr154089	transcription start site region 154089			1287 bp downstream
Tssr154090	transcription start site region 154090			1359 bp downstream