rs261409695 SNP Detail

Summary

• ID
  rs261409695
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:154729324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTCGGCA TCATATGTGG
  GTTTCTTAAC ATAAATAAAT CATACAAACC AAGATTTATG TTCAGGGAGT GATGTCATTC
  ATTGAAGGCT GCCTTCCCAA TCAGATTGTG TTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTTCCT CCCTCCCTCC CCCTCCCCCT CCTGCTCCCC TTCCCCCTCC
  Y
  CCTGTGTGTG TGTGTGTGTG TGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGGAGGGAGA GGGAGGAAGG GAGAGAGAGA GAGAGAGAGA GAGAGAGAGG AGGGAGAGGG
  AGGGAGGGAG GGAGGGAGGA AGGGAGGGAG GGAGGGAGGA AGGGAGGGAG GGAGGGAGGG
  AGGGAGGGAG GGAGGGAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CZECHII/EiJ	DBA/2J	I/LnJ	LEWES/EiJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ZALENDE/EiJ
ss363773737	MGP_WTSI_4_154018976	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CZECHII/EiJ	DBA/2J	I/LnJ	LEWES/EiJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ZALENDE/EiJ
rs261409695					SNP	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363773737	MGP_WTSI_4_154018976	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154729324 () rs orientation: forward

Symbol	Name	Function Class
Gm13110	predicted gene 13110	1763 bp downstream
Gm27202	predicted gene 27202	216 bp downstream
Prdm16os	Prdm16 opposite strand transcript	149 bp downstream
Rr606235	regulatory region 606235	1567 bp distal