rs261410803 SNP Detail

Summary

• ID
  rs261410803
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19279578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCCTCAC ATGAATGCAC
  TCACCTCCTA GAGACCAGGC TGCGATCATG CTCTGGAAAC TCGTGGAGAA TGTCAAGTAC
  GAAGACATCT ATGAGGTGAG CGGACACCCC AGATGCATTT TAGAGCTTTG GAGATAGAAA
  ACTGGAGCTT CTTTGACACC CCAGCTGATA TATTTTAAGC TATTTACTCG TAGATTTCTG
  R
  TCGGGTTTCT GAGGTTTCTT TAAGTTTTCT AAGGCTGGCT CTGGGAGACT TTGCTCTCCA
  GAAAGGGAAC TTTTAAGGTT GGAATGTGAG AAGTTTAATT TAGGAGCTAT TTTCTTTTCC
  TTTTTGTTTT TCTTTCTCTC CGGCTCTCTC CTTCCCCTTG TAGACTCTGG TAGGTAACGT
  GGAGCCAGGA ATTCAGGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss348817495	MGP_WTSI_1_19199435	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	A	A	A	A	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261410803					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	A	A	A	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss348817495	MGP_WTSI_1_19199435	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19279578 () rs orientation: forward

Symbol	Name	Function Class
Cpgi65	CpG island 65	327 bp proximal
Rr408237	regulatory region 408237	1464 bp distal
Rr408238	regulatory region 408238	384 bp distal
Rr408239	regulatory region 408239	within coordinates
Tfap2b	transcription factor AP-2 beta	within coordinates
Tssr6030	transcription start site region 6030	387 bp downstream
Tssr6031	transcription start site region 6031	360 bp downstream
Tssr6032	transcription start site region 6032	343 bp downstream
Tssr6033	transcription start site region 6033	321 bp downstream
Tssr6034	transcription start site region 6034	301 bp downstream
Tssr6035	transcription start site region 6035	265 bp downstream
Tssr6036	transcription start site region 6036	253 bp downstream
Tssr6037	transcription start site region 6037	228 bp downstream
Tssr6038	transcription start site region 6038	201 bp downstream
Tssr6039	transcription start site region 6039	177 bp downstream