rs261415683 SNP Detail

Summary

• ID
  rs261415683
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156352038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATGTTAA CACACACAGA
  CCCCGAGAGT ACTGGGATTA TGAATCACAT GTGGTGGAAT GGGGGAATCA AGATGACTAC
  CAGCTTGTTC GAAAATTAGG TAGGGGCAAA TACAGTGAAG TGTTTGAAGC CATCAACATC
  ACAAATAATG AAAAAGTTGT TGTTAAAATT CTCAAGCCAG TAAAAAAGAA GAAAATTAAG
  Y
  GTGAAATAAA GATTTTGGAG AATTTGAGAG GTGGGCCCAA CATCATCACA CTTGCAGACA
  TTGTAAAAGA CCCTGTGTCA CGAACCCCTG CCTTGGTTTT TGAACATGTA AACAACACAG
  ACTTCAAGCA ATTGTACCAG ACGTTAACAG ACTATGACAT TCGATTTTAC ATGTATGAAA
  TTCTGAAAGC CCTGGATTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	PWK/PhJ	SJL/J	SM/J	WSB/EiJ	ZALENDE/EiJ
ss352039844	MGP_WTSI_1_158454599	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	PWK/PhJ	SJL/J	SM/J	WSB/EiJ	ZALENDE/EiJ
rs261415683					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352039844	MGP_WTSI_1_158454599	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156352038 () rs orientation: forward

Symbol	Name	Function Class
Csnk2a1-ps3	casein kinase 2, alpha 1 polypeptide, pseudogene 3	within coordinates
Rr372288	regulatory region 372288	1161 bp downstream
Rr421189	regulatory region 421189	1982 bp distal
Rr421190	regulatory region 421190	331 bp distal
Tssr9569	transcription start site region 9569	361 bp downstream