About   Help   FAQ
rs261416634 SNP Detail
Summary
  • ID
    rs261416634
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44129789 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AATCCTCATC CTCTTTCTTT
GTTGTCTTCT TCTTGAGATC TCTTTCACCC TTCCTTCTCC TACTTCTCTG GTGTCTTACT
CCCCCCCCCC CACACACACA CCTTCTCCTT ATCTCACCCT CTCCCTGCAT CTCCTCTTTC
TCCAACTTCC TGTCCTGTCT GCCTCTCTTC TTCATCCTAC TCACCCTCCT CCACTTCCAA
Y
TGTTTTCTCT TCAGCCCATC TCCTTTCTAG CTCCTTCTCT ATTCCTCATC TTCCTTTCTC
TGTACCCTCT TCCCCCACTT CCTCATCCTC TCCTCTCTTC CTTCTTGCCC TCATCTTTTC
CTGCAGCTCC AGTTCTCCCA TCATGTTTCT CTTGCTCTTC CTTCTCCATC CATCACTTTC
CTCTTCCTTC CAATTCTCAT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156136 MGP_WTSI_7_51735735 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs261416634 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156136 MGP_WTSI_7_51735735 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44129789 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2227 transcription start site region 2227 1345 bp downstream
Tssr2228 transcription start site region 2228 282 bp downstream
Tssr2229 transcription start site region 2229 7 bp downstream
Tssr2230 transcription start site region 2230 168 bp upstream
Tssr2231 transcription start site region 2231 301 bp upstream
Tssr2232 transcription start site region 2232 476 bp upstream
Tssr2233 transcription start site region 2233 509 bp upstream
Tssr2234 transcription start site region 2234 668 bp upstream
Tssr2235 transcription start site region 2235 1302 bp upstream
Tssr66273 transcription start site region 66273 1992 bp downstream
Tssr66274 transcription start site region 66274 1987 bp downstream
Tssr66275 transcription start site region 66275 1967 bp downstream
Tssr66276 transcription start site region 66276 1947 bp downstream
Tssr66277 transcription start site region 66277 1927 bp downstream
Tssr66278 transcription start site region 66278 1883 bp downstream
Tssr66279 transcription start site region 66279 1838 bp downstream
Tssr66280 transcription start site region 66280 1816 bp downstream
Tssr66281 transcription start site region 66281 1776 bp downstream
Tssr66282 transcription start site region 66282 1759 bp downstream
Tssr66283 transcription start site region 66283 1745 bp downstream
Tssr66284 transcription start site region 66284 1733 bp downstream
Tssr66285 transcription start site region 66285 1719 bp downstream
Tssr66286 transcription start site region 66286 1680 bp downstream
Tssr66287 transcription start site region 66287 1644 bp downstream
Tssr66288 transcription start site region 66288 1619 bp downstream
Tssr66289 transcription start site region 66289 1537 bp downstream
Tssr66290 transcription start site region 66290 1499 bp downstream
Tssr66291 transcription start site region 66291 1473 bp downstream
Tssr66292 transcription start site region 66292 1441 bp downstream
Tssr66293 transcription start site region 66293 1419 bp downstream
Tssr66294 transcription start site region 66294 1395 bp downstream
Tssr66295 transcription start site region 66295 1130 bp downstream
Tssr66296 transcription start site region 66296 959 bp downstream
Tssr66297 transcription start site region 66297 935 bp downstream
Tssr66298 transcription start site region 66298 880 bp downstream
Tssr66299 transcription start site region 66299 860 bp downstream
Tssr66300 transcription start site region 66300 837 bp downstream
Tssr66301 transcription start site region 66301 821 bp downstream
Tssr66302 transcription start site region 66302 780 bp downstream
Tssr66303 transcription start site region 66303 771 bp downstream
Tssr66304 transcription start site region 66304 766 bp downstream
Tssr66305 transcription start site region 66305 727 bp downstream
Tssr66306 transcription start site region 66306 673 bp downstream
Tssr66307 transcription start site region 66307 624 bp downstream
Tssr66308 transcription start site region 66308 607 bp downstream
Tssr66309 transcription start site region 66309 557 bp downstream
Tssr66310 transcription start site region 66310 488 bp downstream
Tssr66311 transcription start site region 66311 465 bp downstream
Tssr66312 transcription start site region 66312 446 bp downstream
Tssr66313 transcription start site region 66313 436 bp downstream
Tssr66314 transcription start site region 66314 418 bp downstream
Tssr66315 transcription start site region 66315 411 bp downstream
Tssr66316 transcription start site region 66316 346 bp downstream
Tssr66317 transcription start site region 66317 330 bp downstream
Tssr66318 transcription start site region 66318 289 bp downstream
Tssr66319 transcription start site region 66319 261 bp downstream
Tssr66320 transcription start site region 66320 237 bp downstream
Tssr66321 transcription start site region 66321 213 bp downstream
Tssr66322 transcription start site region 66322 197 bp downstream
Tssr66323 transcription start site region 66323 159 bp downstream
Tssr66324 transcription start site region 66324 106 bp downstream
Tssr66325 transcription start site region 66325 65 bp downstream
Tssr66326 transcription start site region 66326 55 bp downstream
Tssr66327 transcription start site region 66327 35 bp downstream
Tssr66328 transcription start site region 66328 17 bp downstream
Tssr66329 transcription start site region 66329 5 bp upstream
Tssr66330 transcription start site region 66330 24 bp upstream
Tssr66331 transcription start site region 66331 38 bp upstream
Tssr66332 transcription start site region 66332 59 bp upstream
Tssr66333 transcription start site region 66333 107 bp upstream
Tssr66334 transcription start site region 66334 119 bp upstream
Tssr66335 transcription start site region 66335 128 bp upstream
Tssr66336 transcription start site region 66336 137 bp upstream
Tssr66337 transcription start site region 66337 155 bp upstream
Tssr66338 transcription start site region 66338 211 bp upstream
Tssr66339 transcription start site region 66339 262 bp upstream
Tssr66340 transcription start site region 66340 307 bp upstream
Tssr66341 transcription start site region 66341 352 bp upstream
Tssr66342 transcription start site region 66342 414 bp upstream
Tssr66343 transcription start site region 66343 446 bp upstream
Tssr66344 transcription start site region 66344 591 bp upstream
Tssr66345 transcription start site region 66345 624 bp upstream
Tssr66346 transcription start site region 66346 680 bp upstream
Tssr66347 transcription start site region 66347 718 bp upstream
Tssr66348 transcription start site region 66348 759 bp upstream
Tssr66349 transcription start site region 66349 783 bp upstream
Tssr66350 transcription start site region 66350 811 bp upstream
Tssr66351 transcription start site region 66351 819 bp upstream
Tssr66352 transcription start site region 66352 855 bp upstream
Tssr66353 transcription start site region 66353 929 bp upstream
Tssr66354 transcription start site region 66354 943 bp upstream
Tssr66355 transcription start site region 66355 970 bp upstream
Tssr66356 transcription start site region 66356 987 bp upstream
Tssr66357 transcription start site region 66357 1001 bp upstream
Tssr66358 transcription start site region 66358 1013 bp upstream
Tssr66359 transcription start site region 66359 1039 bp upstream
Tssr66360 transcription start site region 66360 1051 bp upstream
Tssr66361 transcription start site region 66361 1077 bp upstream
Tssr66362 transcription start site region 66362 1109 bp upstream
Tssr66363 transcription start site region 66363 1126 bp upstream
Tssr66364 transcription start site region 66364 1159 bp upstream
Tssr66365 transcription start site region 66365 1179 bp upstream
Tssr66366 transcription start site region 66366 1199 bp upstream
Tssr66367 transcription start site region 66367 1227 bp upstream
Tssr66368 transcription start site region 66368 1249 bp upstream
Tssr66369 transcription start site region 66369 1283 bp upstream
Tssr66370 transcription start site region 66370 1325 bp upstream
Tssr66371 transcription start site region 66371 1750 bp upstream
Tssr66372 transcription start site region 66372 1913 bp upstream
Tssr72200 transcription start site region 72200 1924 bp upstream
Tssr72201 transcription start site region 72201 1414 bp upstream
Tssr72202 transcription start site region 72202 557 bp upstream
Tssr72203 transcription start site region 72203 177 bp upstream
Tssr72204 transcription start site region 72204 410 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory