rs261417352 SNP Detail

Summary

• ID
  rs261417352
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156133512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTACCAT CAACTCCTCT
  TCTCCCAGCA CCCCTGCCCC AGATGTTGTC CCTTTTCCCT ATTTGCCGTC TTTGGAACAT
  TTTAGGGCAT TTTAAATTAA TTCCTAGACA AAAGTTTGTG CCTCCCATCA CATCAAGTGA
  ATAAACCCAG TGTGTTGGGT GAATGATGAG ACGGTACAGA GAACTCTGTG ACTGGGAAGG
  R
  TAAGACAAGG CCTTTGGATA GGAGCAGGTC AGCCTTAAGG AGGAAGACAG GTCTGTGGAT
  TGACTGACTG ACAGCAAAGA AAGGCCAAAT ATGGGCATCA TGTCTATCAA TTCTACCCCT
  ACTGAATCAA CAGGAGAAGA AAAAAAAAAT CCAAAAAGTT CTGTAGGGTG GAGAGAAATC
  CTGGAATGAG AAACTCATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363810786	MGP_WTSI_4_155423164	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	G	A	A	G	G	A	G	G	G	G	G	G	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261417352					SNP	A	A	A	A	G	A	A	G	G	A	G	G	G	G	G	G	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363810786	MGP_WTSI_4_155423164	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156133512 () rs orientation: forward

Symbol	Name	Function Class
Rr93557	regulatory region 93557	1289 bp proximal
Rr106662	regulatory region 106662	677 bp proximal
Tssr44999	transcription start site region 44999	1083 bp upstream
Tssr45000	transcription start site region 45000	1410 bp downstream
Tssr45001	transcription start site region 45001	1443 bp downstream
Tssr45002	transcription start site region 45002	1678 bp downstream
Tssr45003	transcription start site region 45003	1707 bp downstream
Tssr45004	transcription start site region 45004	1730 bp downstream
Ttll10	tubulin tyrosine ligase-like family, member 10	within coordinates