rs261420265 SNP Detail

Summary

• ID
  rs261420265
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184466140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGCACAT TTCAGGAAGA
  AAATAAAATA ATGACAATAA CGAAACCACC AAATCTTTTG TTTTCGATTG TCCAAGTAAG
  TGTCTCCGGA ATGATATTCC AAGGCAGGCT TATTTCCCCT CAGCAATAAG ATACCAAAAA
  CTGGAAGCCG TGAGGGAACT GCCAGGCTAC TATCAGCTCA GGATTGGCGT GAGCTCTTGG
  R
  TTAATGTCTA ACAGCTTCGT GTCCTTGGTC GCCGGTATTG TCATCATTAG CGGACGCCTT
  TTTCCTCGAA AGCAATCGAT GGCTAATCAA TCACAGGCTA TGATGTCCCA GTATCAGGGA
  CAGGGGTACT AACTATATCA AGGAATGGAG GGGTATAGAC AGTTGAGGGC AATGGTGCCT
  GGGACGAGAG GGGCCGGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320168845	CHEV_1_186557822	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261420265					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184466140 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1158	CpG island 1158	704 bp distal
Cpgi1159	CpG island 1159	632 bp proximal
Gm34342	predicted gene, 34342	within coordinates
Hlx	H2.0-like homeobox	1450 bp upstream
Rr396693	regulatory region 396693	1093 bp downstream
Rr425266	regulatory region 425266	1159 bp distal
Rr425267	regulatory region 425267	within coordinates
Rr425268	regulatory region 425268	225 bp proximal
Tssr10589	transcription start site region 10589	1139 bp downstream
Tssr10590	transcription start site region 10590	1463 bp upstream
Tssr15638	transcription start site region 15638	1994 bp upstream
Tssr15639	transcription start site region 15639	1825 bp upstream
Tssr15640	transcription start site region 15640	1794 bp upstream
Tssr15641	transcription start site region 15641	1756 bp upstream
Tssr15642	transcription start site region 15642	1504 bp upstream
Tssr15643	transcription start site region 15643	1452 bp upstream
Tssr15644	transcription start site region 15644	1418 bp upstream
Tssr15645	transcription start site region 15645	1398 bp upstream
Tssr15646	transcription start site region 15646	1316 bp upstream
Tssr15647	transcription start site region 15647	1249 bp upstream
Tssr15648	transcription start site region 15648	1077 bp downstream