rs261421311 SNP Detail

Summary

• ID
  rs261421311
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:24527749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGTCCAGC GCCTCCAGCG
  CACAGCCCTC TGGGAACCTT TCCCAAGCCC GCTCAATCGA GCGTCGATGC TGCCCCTGAG
  TCACCTAAGA ACACTCTTGG CTCCAACCGC TCGGGCTGGG TAGGGGCAGC TCCCGCCCAC
  CTAGGAGAGG TAGATTTGCG CCTGCGCAGC TCACACAAGC GGCTCCACGC AGGGCTTTGG
  Y
  GTAGTAGAGA CCGACTGACG TCTCTGAGTA CTAAAGGTTA AGAAAAGCGC TACGCTACGG
  AAAAACTTGC AACGTAGTCA CTGCAGGGAC TTTGATTTTG CTCAGCCTTC GACTGCTATT
  TTACCCGGAC TTCCTCAGGT TATGGAAATG AGGGTGGAAG CAGGCCTGAG CACCATGAAG
  AATGCTTTCC CTCCACGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367701136	MGP_WTSI_6_24477750	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261421311					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367701136	MGP_WTSI_6_24477750	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:24527749 () rs orientation: forward

Symbol	Name	Function Class
Asb15	ankyrin repeat and SOCS box-containing 15	394 bp upstream
Cpgi17202	CpG island 17202	within coordinates
Ndufa5	NADH:ubiquinone oxidoreductase subunit A5	60 bp upstream
Rr399585	regulatory region 399585	within coordinates
Rr627233	regulatory region 627233	191 bp distal
Rr627234	regulatory region 627234	within coordinates
Rr627235	regulatory region 627235	405 bp proximal
Tssr55166	transcription start site region 55166	436 bp upstream
Tssr55167	transcription start site region 55167	461 bp upstream
Tssr59987	transcription start site region 59987	165 bp upstream
Tssr59988	transcription start site region 59988	275 bp downstream