rs261425190 SNP Detail

Summary

• ID
  rs261425190
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:80178864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCCAAAC TTGTTAAAGG
  GACACCCCTC TCCACTGTGT TTCTCAAGCG CTGGTGGTGA GTCAGAATGG GACAGTCACC
  GGCGTCGCGG AACACGCGCT GCACGAACAG GCAAGAGTCG TTAGCGCCAC CACAGAGGCC
  GCAGCGGTCC TCGAGGGTGC CGGAGCCCAG TATCCCGTCA CAGCCTGCGC TCTGCGGGGG
  M
  GGGGGGGGGA CGGGGGGGGG GACGGGACAC TGGGTCAGAA TCAGCGGGGC ATGAGAGGGC
  GGGGCTGTGG GAGGGGCGGG ACTAAGGAAC AAGGTTTGAT AGGTGGGCGA GACTGAAGGA
  ATTACGTGGG CGGGACCTAG TGAGAACAAG GCACTGGAGC AGACTCTAGA GACAAAGCTT
  TTTGGTGGGC GTGGCCTGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	FVB/NJ	LG/J	NON/ShiLtJ	NZO/HlLtJ	SM/J
ss381017968	MGP_WTSI_10_79805775	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	C	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	FVB/NJ	LG/J	NON/ShiLtJ	NZO/HlLtJ	SM/J
rs261425190					SNP	A	A	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381017968	MGP_WTSI_10_79805775	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80178864 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adamtsl5	ADAMTS-like 5			Intron
				Noncoding-Transcript-Variant
Rr435198	regulatory region 435198			1276 bp distal