rs261431971 SNP Detail

Summary

• ID
  rs261431971
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:35727350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCCTATA GTTGGCAGAA
  ATTGATGGCT ATCCTTACCA TATTCCCATT AATACATTCA GTTAGCAACG TGCTCTGGGG
  ATAGCTGTAC TCATGGTATG GGTCAAAGAT ATGGAAATGA GTTATTCCAG AAGCATCTAG
  AATATAACAA GTAGAATATA GACTTCACTA CTGTGGCTTA ACATTGCGAC TTAACTTATA
  R
  CAGTAGAGAG TGACTCTCAG CACCGTGGAT CTACAGCAGC GGATGCTGGA TCTCAGTAAT
  TCGGTCTACA ATAGCAAACA CTGGATAAAC AATGCAGGGC TTTAGTTTCC AAAGTCTTGT
  CTTTAATTCT TTTCTTCCAG TGCTGGGATT AAGCCCAGGG CTTTGTGTTT GCTAAGCCAC
  ACTACTATTC TATTGAGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382990301	MGP_WTSI_11_35650025	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	G	G	A	G	G	A	A	G	A	A	G	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261431971					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	G	G	A	G	G	A	A	G	A	A	G	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382990301	MGP_WTSI_11_35650025	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:35727350 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2730	CpG island 2730	1779 bp distal
Cpgi2731	CpG island 2731	1914 bp proximal
Rr402482	regulatory region 402482	1852 bp downstream
Rr402483	regulatory region 402483	1830 bp upstream
Rr445144	regulatory region 445144	1551 bp distal
Rr445145	regulatory region 445145	1904 bp distal
Rr445146	regulatory region 445146	801 bp proximal
Rr445147	regulatory region 445147	1670 bp proximal
Tssr107409	transcription start site region 107409	1993 bp upstream
Tssr107410	transcription start site region 107410	495 bp upstream
Wwc1	WW, C2 and coiled-coil domain containing 1	1877 bp downstream