rs261436404 SNP Detail

Summary

• ID
  rs261436404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30734215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACATA CACACACACA
  CACACACACA CACACACACA CACAGATTCA AGGCCATCTT TGGTCGACAT GCTCCTCTGT
  CTCAAAACAA AATAAACCCA AAAACTGCTG ATCAGCTTGG CACACCTATA ACCTCAAGCC
  TCAGGAGGCT GAAGCAGGAG GATTGTGAGT TTGACGCCAG CCTGAGCAAC ACAGTGAGAC
  Y
  CTGTCTTAAA AGGATGAATG AAGTCCTGTT TTCTCTTCTC ACAAATGAAG CCGACCCTTG
  GCTTGTAAAG AAGCATAACG TAGTATCCAC TAGCAGTCAT CTGAGTCTGC ATATCTCTGT
  CCTGTGTGTC TCTGTATCGC TCATCGGGGC ACTACCACGT GACCGAGCCC AGGAAGAAAA
  GGACAACAGA GGAAGAGACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322138573	CHEV_7_31819809	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261436404					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30734215 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Tssr2191	transcription start site region 2191	670 bp downstream
Tssr65829	transcription start site region 65829	1867 bp downstream
Tssr65830	transcription start site region 65830	438 bp upstream
Tssr71891	transcription start site region 71891	1667 bp downstream