rs261439276 SNP Detail

Summary

• ID
  rs261439276
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128659491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGTTGTT TTGGTCACCT
  TATTCTGGGA ATCTCATACA AATCAAATTT AATACAAACT GAGAACTGTT CTTACTGAGA
  CATGATCTCA CTCTGTAGCT CTAGCTGGCA TGAAACTCAC AGAGATCCTA CCTTTATGTC
  TCCCAGGTGT CAGGATTAGA GACATTAACT GTCATGCCCA GTTTTTTGTT GTTGTTTTGG
  K
  TTTTTTTTGT TTTTTTTTTG TTTTTTTTTT TTAATAGTTG TTTTTAATTA TTGGATTGTG
  ATGATTTTTA AAAAAATATT TATTTATTTT ATGTGTCAGG TATTTTGTAT GTATGGATGT
  CTGTGTACCT GCACAATTAC AGATAGTTTT TAGTCTCAAT GTATGTGCTG GAAATTGAAC
  CTGGGTCCTC TGAAGGAACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382211327	MGP_WTSI_10_128260678	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261439276					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382211327	MGP_WTSI_10_128260678	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128659491 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2421	CpG island 2421	1455 bp distal
Ormdl2	ORM1-like 2 (S. cerevisiae)	1993 bp upstream
Rr402366	regulatory region 402366	1800 bp downstream
Sarnp	SAP domain containing ribonucleoprotein	within coordinates
Tssr96458	transcription start site region 96458	1885 bp downstream
Tssr96459	transcription start site region 96459	1849 bp downstream
Tssr96460	transcription start site region 96460	1822 bp downstream
Tssr96461	transcription start site region 96461	1709 bp downstream
Tssr99967	transcription start site region 99967	1990 bp upstream