rs261442129 SNP Detail

Summary

• ID
  rs261442129
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170471807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTTCGTAA GTTCAAAGCT TCCCGTACTC
  CAGATGGAGT CAAGTTCCGG aaaacaaaac aaaacaaaac aaaaACCAAC AACAATAAAA
  CACTTCAAGA GAAGAGGTCG TGTTTCTCCG CTGTCCCGGT TGCAGTCCAG GGAGCAAGTC
  R
  GGGCTCCCCC GGAGCTCGGG CGTGAAGAAA ACTCGAGAAA AGGCACACGG AGTCCCTCTC
  GGATGACCAT TTACAATCAG ATGCAAGGCC AGCAGCGCCC TTCCCACGCC AGCCGGCGCC
  CGCTTAAGCG CAGTGGCTGA ACCCTAGAGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320111988	CHEV_1_172574369	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261442129					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170471807 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	within coordinates
Olfml2b	olfactomedin-like 2B	294 bp upstream
Tssr280	transcription start site region 280	106 bp downstream
Tssr9927	transcription start site region 9927	1387 bp downstream
Tssr9928	transcription start site region 9928	211 bp upstream
Tssr9929	transcription start site region 9929	252 bp upstream
Tssr9930	transcription start site region 9930	285 bp upstream
Tssr9931	transcription start site region 9931	334 bp upstream
Tssr9932	transcription start site region 9932	351 bp upstream
Tssr9933	transcription start site region 9933	547 bp upstream
Tssr14922	transcription start site region 14922	90 bp downstream
Tssr14923	transcription start site region 14923	141 bp downstream