rs261444612 SNP Detail

Summary

• ID
  rs261444612
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128582950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAGGGAT TAGAAGTATA
  CATGTAGCCG GGCCGTGGTG GTGTACACCT TTAATCCCAG TACTTGGGAG GCAGAGACAG
  GCAGATTTCT GAGTTCGAGG CCAGTCTGGT CTACAAAGTG AGTTCCAGGA CAGCCAGGGC
  TATACAGAGA AACCCTGTTT CGAAAAAAAA AAAAAAAAGA AAAGAAAAGA AAGAAGTATA
  M
  ACGTGTAAAA ACATGTAGTG CATGCAAATA GCATTAAAGT CATTTTGAGA CTTGAATTGA
  AAGGAGAGAG GTTAAAGCTG GGAGAATTGC AAGGAGGACA ATGTGTGAGC TTTTGAAAAC
  TTAGTTGAGG TTCTTATTAG CCTGTTTTGT TTCTTTTTTT TTTTTTTTTT TTTCCTTTTG
  GTTTTTTTTT TTTTTTTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382210108	MGP_WTSI_10_128184137	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261444612					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382210108	MGP_WTSI_10_128184137	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128582950 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2419	CpG island 2419	621 bp proximal
Gm31504	predicted gene, 31504	1199 bp downstream
Gm66065	predicted gene, 66065	732 bp upstream
Pym1	PYM homolog 1, exon junction complex associated factor	808 bp upstream
Rr224483	regulatory region 224483	749 bp distal
Rr224484	regulatory region 224484	250 bp proximal
Rr385481	regulatory region 385481	244 bp upstream
Tssr96442	transcription start site region 96442	1847 bp downstream
Tssr96443	transcription start site region 96443	607 bp downstream
Tssr96444	transcription start site region 96444	707 bp upstream
Tssr96445	transcription start site region 96445	769 bp upstream
Tssr96446	transcription start site region 96446	1420 bp upstream
Tssr96447	transcription start site region 96447	1670 bp upstream
Tssr99951	transcription start site region 99951	2000 bp upstream
Tssr99952	transcription start site region 99952	1996 bp upstream
Tssr99953	transcription start site region 99953	1959 bp upstream
Tssr99954	transcription start site region 99954	1615 bp upstream
Tssr99955	transcription start site region 99955	1582 bp upstream
Tssr99956	transcription start site region 99956	829 bp upstream
Tssr99957	transcription start site region 99957	769 bp upstream
Tssr99958	transcription start site region 99958	547 bp downstream
Tssr99959	transcription start site region 99959	639 bp downstream