rs261444688 SNP Detail

Summary

• ID
  rs261444688
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:33788543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGGGAGT TGATGAATTC
  ACATAAAACC AGAAAGTATT TCAAACTCTC CCACAGATCA GATTGCAGAG AATGGCTTGC
  AAGCCAGCTG TGGGATTTCA CCCAATGTCT GATAGTCCCA CATAAACCAC ACTGGTGATG
  CTGAGGACAG GTGCCAGTAT CAGTGTTTAT CATGTCCCAA AGGTAACCAG CCAAGGGAAG
  R
  TATTAAAATC ATCCTTGGTT CACAGTTAGG CTGCTACTCC ACCAAGGGGC CATTTTCCCT
  CCATGACAAA GAATAGCAAT GTCACCAGCC TGTCTCCTCA ATGCTTGCCT CCATCTCCCT
  GAGAATGTTA TGTGTACCTC AGTGGGCCAT GTGAAGGGGA AAGACAGTGA TGGCCTAACT
  CCAAACCTCC ACTACTCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364484816	MGP_WTSI_5_33973848	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261444688					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364484816	MGP_WTSI_5_33973848	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:33788543 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15737	CpG island 15737	824 bp distal
Fam53a	family with sequence similarity 53, member A	1564 bp upstream
Gm9903	predicted gene 9903	Noncoding-Transcript-Variant
Rr399034	regulatory region 399034	1260 bp downstream
Rr609576	regulatory region 609576	1797 bp distal
Rr609577	regulatory region 609577	1264 bp distal
Rr609578	regulatory region 609578	246 bp distal
Tssr45824	transcription start site region 45824	1269 bp downstream
Tssr45825	transcription start site region 45825	1235 bp downstream
Tssr50608	transcription start site region 50608	1655 bp upstream
Tssr50609	transcription start site region 50609	1550 bp upstream