rs261457462 SNP Detail

Summary

• ID
  rs261457462
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:52272187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCCCTGG CCCCTCAAGC
  CACACCGATC TACACACCTA CAGGCCGGCA GCGGGGAACG TGCAGGACAC GATGCAGCCG
  GACTGCATTG CACAGTCATC AAAGTTAAGT GTGTGTTTGT GGGGTGCTCG TGCGCGCCCG
  GGGAGGTGCG GGGTCGGGAG GAGTGGAGCC TCCACTCTGC TTACCACCAC CCCCATTCCC
  K
  CGGGTCAGGG GACGCATCTA CTTGAGGTTG CAGCCATTTT AGGGAAAGAG GTGGCTCCGG
  GCCCCAAGGG AGTGGAGGGA GGGACAACGC GTCGCGGGGG GTCTCACAGC TAGACAGCCC
  CGGGGCTCAA CTGGAGGGCG GGCGAACGCC CGGCGCACAG GGGCGCGGCG CCCGCGGCGA
  CTTGGTGAAG GTTGCGCTCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364927583	MGP_WTSI_5_52506084	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261457462					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364927583	MGP_WTSI_5_52506084	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:52272187 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15852	CpG island 15852	within coordinates
Gm40302	predicted gene, 40302	within coordinates
Gm43177	predicted gene 43177	1022 bp upstream
Gm71495	predicted gene, 71495	within coordinates
Gm72113	predicted gene, 72113	1614 bp upstream
Rr611383	regulatory region 611383	1625 bp distal
Rr611384	regulatory region 611384	1124 bp distal
Rr611385	regulatory region 611385	within coordinates
Rr611386	regulatory region 611386	848 bp proximal
Rr611387	regulatory region 611387	1033 bp proximal
Rr611388	regulatory region 611388	1381 bp proximal
Tssr50981	transcription start site region 50981	926 bp downstream
Tssr50982	transcription start site region 50982	960 bp downstream
Tssr50983	transcription start site region 50983	1059 bp downstream
Tssr50984	transcription start site region 50984	1088 bp downstream