rs261459504 SNP Detail

Summary

• ID
  rs261459504
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9675809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCAGTTT CCACCTGAGG
  TCCTTACCTG GTGATATGAT ATGGGCCGAA TTCCAAAAGT GTTCTTTCTG CTCTTGGTTT
  GGTCTACTGG CACTGTCCCA GTCTAGAGAA AGCAACACAC CAAGTGGTCA AGATTGTTAT
  TTCAGCTTTT TATATATGTA AGCTAGCAGA AGGCCAGTTT GCCATGTTAT GAATGACTGC
  Y
  GCTTTCGGAG GGAGTAAACC AGACATTCTG CATCCAGATC ATGCCCCTAA ATTCTATAGG
  TTTTGGCTAG GGCTAGGAGG GCCTTATTCA TCAACAATTG AGTAAAAGGG TGTCCACATG
  GCCCATTGTT CTTGGAGATT GAACATCACG TGGCTTGCTA GACATGTGAT GGGGCTCATT
  AAATGTTTAT TTGGGGTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320651686	CHEV_3_9610749	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261459504					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9675809 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12974	CpG island 12974	233 bp distal
Gm56803	predicted gene, 56803	1766 bp downstream
Rr69501	regulatory region 69501	9 bp distal
Rr73453	regulatory region 73453	792 bp proximal
Rr78141	regulatory region 78141	208 bp distal
Tssr28346	transcription start site region 28346	1925 bp downstream
Tssr28347	transcription start site region 28347	1908 bp downstream
Tssr32578	transcription start site region 32578	709 bp upstream
Tssr32579	transcription start site region 32579	663 bp upstream
Tssr32580	transcription start site region 32580	625 bp upstream
Tssr32581	transcription start site region 32581	502 bp upstream
Zfp704	zinc finger protein 704	664 bp upstream