rs261462192 SNP Detail

Summary

• ID
  rs261462192
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:60032733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGCACTC AAAGCTGTCA
  GATCTTCACT TTGGGTTAGT GGAGAGGTGT GGGGCTGGGT GGGCGTTGGG AACCCCAGCT
  TTGATAGATA GCTAGTTGAG CTGCCCCAAG GGAATGGAGT CCAGATACCA TAGGCTGGCT
  GTTAAAGCTG AGGAAGACAC CTCTCTCCCT AGAAACTGGA TTCTTAGGGG AACAAGGGGA
  T
  ATGGATTGTC TTTAGACTGT TCTGTGCCTG GGTCCAGGAA TCCAAAGAGT TAACCTTCTC
  CCAGAAATCT GTCAGTCCCT AAACAACAGA GAAACATTGT TAGCCCCTCC ATGCTAACAG
  CATGATACTG CCTGGCAGGA GCTGCAGATC CAGACCCGCT TTCCCTATTC ATGGCAGCAG
  CAATCTCTGC CTCTAGCTGG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323700433	CHEV_11_59955409	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261462192					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60032733 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2977	CpG island 2977			959 bp distal
Gm53710	predicted gene, 53710			1537 bp upstream
Gm72548	predicted gene, 72548			956 bp upstream
Rai1	retinoic acid induced 1			Intron
				Noncoding-Transcript-Variant
Rr448331	regulatory region 448331			1813 bp distal
Rr448332	regulatory region 448332			1286 bp distal
Rr448333	regulatory region 448333			466 bp distal
Rr448334	regulatory region 448334			606 bp distal
Tssr101878	transcription start site region 101878			1882 bp downstream
Tssr101879	transcription start site region 101879			1827 bp downstream