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rs261465093 SNP Detail
Summary
  • ID
    rs261465093
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44128937 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TAGGCCAGGC TGGCCCCGAA
CTCAGAAATC CACCTGCCTC TGCCTCCCGA GTTCTGGGAT TAAAGGCATG TGCCACCATG
CCCGGCTCAT CTCATTTTCT TATTCTCCTT CCTACTTCTC CATTGCTTCC TCTTTCCCCT
CTCTCCTGCC TTTTCATTTA CTATTCTTTT CCCCTTCTCC TCTTCTTCTT CAATCTCCTG
W
CCTCTTCCTT ACCACTCCTC TTTTCCTTCT CCATCTTCTT ATTCATAGTC CTCGTTCCCC
CCATATCTCT TCTTCCCACT TCTTCTCCTG CTCCTCATAT GTTCTATTTC TCCTTATTAA
TCCCCCACTG CCTGTGTCTT CTTTCCTCCT CCCGACCCTC CATATCAGTC TCCACTTCCT
CCACCTCCTC CTCCTGCTGC                                            

W = A/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156119 MGP_WTSI_7_51734883 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs261465093 SNP T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156119 MGP_WTSI_7_51734883 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44128937 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2226 transcription start site region 2226 1568 bp downstream
Tssr2227 transcription start site region 2227 493 bp downstream
Tssr2228 transcription start site region 2228 565 bp upstream
Tssr2229 transcription start site region 2229 841 bp upstream
Tssr2230 transcription start site region 2230 1020 bp upstream
Tssr2231 transcription start site region 2231 1153 bp upstream
Tssr2232 transcription start site region 2232 1328 bp upstream
Tssr2233 transcription start site region 2233 1361 bp upstream
Tssr2234 transcription start site region 2234 1520 bp upstream
Tssr66247 transcription start site region 66247 1978 bp downstream
Tssr66248 transcription start site region 66248 1937 bp downstream
Tssr66249 transcription start site region 66249 1914 bp downstream
Tssr66250 transcription start site region 66250 1895 bp downstream
Tssr66251 transcription start site region 66251 1870 bp downstream
Tssr66252 transcription start site region 66252 1839 bp downstream
Tssr66253 transcription start site region 66253 1811 bp downstream
Tssr66254 transcription start site region 66254 1763 bp downstream
Tssr66255 transcription start site region 66255 1736 bp downstream
Tssr66256 transcription start site region 66256 1687 bp downstream
Tssr66257 transcription start site region 66257 1676 bp downstream
Tssr66258 transcription start site region 66258 1633 bp downstream
Tssr66259 transcription start site region 66259 1597 bp downstream
Tssr66260 transcription start site region 66260 1490 bp downstream
Tssr66261 transcription start site region 66261 1469 bp downstream
Tssr66262 transcription start site region 66262 1462 bp downstream
Tssr66263 transcription start site region 66263 1450 bp downstream
Tssr66264 transcription start site region 66264 1426 bp downstream
Tssr66265 transcription start site region 66265 1383 bp downstream
Tssr66266 transcription start site region 66266 1366 bp downstream
Tssr66267 transcription start site region 66267 1329 bp downstream
Tssr66268 transcription start site region 66268 1313 bp downstream
Tssr66269 transcription start site region 66269 1277 bp downstream
Tssr66270 transcription start site region 66270 1242 bp downstream
Tssr66271 transcription start site region 66271 1210 bp downstream
Tssr66272 transcription start site region 66272 1158 bp downstream
Tssr66273 transcription start site region 66273 1140 bp downstream
Tssr66274 transcription start site region 66274 1135 bp downstream
Tssr66275 transcription start site region 66275 1115 bp downstream
Tssr66276 transcription start site region 66276 1095 bp downstream
Tssr66277 transcription start site region 66277 1075 bp downstream
Tssr66278 transcription start site region 66278 1031 bp downstream
Tssr66279 transcription start site region 66279 986 bp downstream
Tssr66280 transcription start site region 66280 964 bp downstream
Tssr66281 transcription start site region 66281 924 bp downstream
Tssr66282 transcription start site region 66282 907 bp downstream
Tssr66283 transcription start site region 66283 893 bp downstream
Tssr66284 transcription start site region 66284 881 bp downstream
Tssr66285 transcription start site region 66285 867 bp downstream
Tssr66286 transcription start site region 66286 828 bp downstream
Tssr66287 transcription start site region 66287 792 bp downstream
Tssr66288 transcription start site region 66288 767 bp downstream
Tssr66289 transcription start site region 66289 685 bp downstream
Tssr66290 transcription start site region 66290 647 bp downstream
Tssr66291 transcription start site region 66291 621 bp downstream
Tssr66292 transcription start site region 66292 589 bp downstream
Tssr66293 transcription start site region 66293 567 bp downstream
Tssr66294 transcription start site region 66294 543 bp downstream
Tssr66295 transcription start site region 66295 278 bp downstream
Tssr66296 transcription start site region 66296 107 bp downstream
Tssr66297 transcription start site region 66297 83 bp downstream
Tssr66298 transcription start site region 66298 28 bp downstream
Tssr66299 transcription start site region 66299 8 bp downstream
Tssr66300 transcription start site region 66300 within coordinates
Tssr66301 transcription start site region 66301 20 bp upstream
Tssr66302 transcription start site region 66302 34 bp upstream
Tssr66303 transcription start site region 66303 75 bp upstream
Tssr66304 transcription start site region 66304 83 bp upstream
Tssr66305 transcription start site region 66305 93 bp upstream
Tssr66306 transcription start site region 66306 127 bp upstream
Tssr66307 transcription start site region 66307 184 bp upstream
Tssr66308 transcription start site region 66308 237 bp upstream
Tssr66309 transcription start site region 66309 258 bp upstream
Tssr66310 transcription start site region 66310 296 bp upstream
Tssr66311 transcription start site region 66311 373 bp upstream
Tssr66312 transcription start site region 66312 389 bp upstream
Tssr66313 transcription start site region 66313 410 bp upstream
Tssr66314 transcription start site region 66314 418 bp upstream
Tssr66315 transcription start site region 66315 438 bp upstream
Tssr66316 transcription start site region 66316 497 bp upstream
Tssr66317 transcription start site region 66317 509 bp upstream
Tssr66318 transcription start site region 66318 554 bp upstream
Tssr66319 transcription start site region 66319 577 bp upstream
Tssr66320 transcription start site region 66320 604 bp upstream
Tssr66321 transcription start site region 66321 622 bp upstream
Tssr66322 transcription start site region 66322 642 bp upstream
Tssr66323 transcription start site region 66323 688 bp upstream
Tssr66324 transcription start site region 66324 717 bp upstream
Tssr66325 transcription start site region 66325 747 bp upstream
Tssr66326 transcription start site region 66326 788 bp upstream
Tssr66327 transcription start site region 66327 802 bp upstream
Tssr66328 transcription start site region 66328 818 bp upstream
Tssr66329 transcription start site region 66329 857 bp upstream
Tssr66330 transcription start site region 66330 876 bp upstream
Tssr66331 transcription start site region 66331 890 bp upstream
Tssr66332 transcription start site region 66332 911 bp upstream
Tssr66333 transcription start site region 66333 959 bp upstream
Tssr66334 transcription start site region 66334 971 bp upstream
Tssr66335 transcription start site region 66335 980 bp upstream
Tssr66336 transcription start site region 66336 989 bp upstream
Tssr66337 transcription start site region 66337 1007 bp upstream
Tssr66338 transcription start site region 66338 1063 bp upstream
Tssr66339 transcription start site region 66339 1114 bp upstream
Tssr66340 transcription start site region 66340 1159 bp upstream
Tssr66341 transcription start site region 66341 1204 bp upstream
Tssr66342 transcription start site region 66342 1266 bp upstream
Tssr66343 transcription start site region 66343 1298 bp upstream
Tssr66344 transcription start site region 66344 1443 bp upstream
Tssr66345 transcription start site region 66345 1476 bp upstream
Tssr66346 transcription start site region 66346 1532 bp upstream
Tssr66347 transcription start site region 66347 1570 bp upstream
Tssr66348 transcription start site region 66348 1611 bp upstream
Tssr66349 transcription start site region 66349 1635 bp upstream
Tssr66350 transcription start site region 66350 1663 bp upstream
Tssr66351 transcription start site region 66351 1671 bp upstream
Tssr66352 transcription start site region 66352 1707 bp upstream
Tssr66353 transcription start site region 66353 1781 bp upstream
Tssr66354 transcription start site region 66354 1795 bp upstream
Tssr66355 transcription start site region 66355 1822 bp upstream
Tssr66356 transcription start site region 66356 1839 bp upstream
Tssr66357 transcription start site region 66357 1853 bp upstream
Tssr66358 transcription start site region 66358 1865 bp upstream
Tssr66359 transcription start site region 66359 1891 bp upstream
Tssr66360 transcription start site region 66360 1903 bp upstream
Tssr66361 transcription start site region 66361 1929 bp upstream
Tssr66362 transcription start site region 66362 1961 bp upstream
Tssr66363 transcription start site region 66363 1978 bp upstream
Tssr72200 transcription start site region 72200 1072 bp upstream
Tssr72201 transcription start site region 72201 562 bp upstream
Tssr72202 transcription start site region 72202 280 bp downstream
Tssr72203 transcription start site region 72203 666 bp downstream
Tssr72204 transcription start site region 72204 1262 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory