rs261489567 SNP Detail

Summary

• ID
  rs261489567
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32608690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATTTTAG TGTTCAACAG
  ATGGAGTCAA CTCTTGGGGA TTCCTGAAGC TAGCAGAGTG CAAAGTGCCT ACTTTTAGAA
  TAGGAAGCTG GACTCAGAGA AAAGTGACTT TGGAGGTGAA AGGATCTAGA AAGATAAAGG
  GAGAAGATGA TGCATTTTGG AAAACAATCA GATGTCAAAA CACACACGTC TATTGGGTCT
  R
  ATTATCTGTA ACTTTAACTG CTGTCCCTGA TCTCTTGCCT CTGCCGTAAA TAACTGCATA
  TTTAACCTGT TCTTTAGACT TTCAATACAA GCCAAGATGA CGTTTTGACA TTCTGATGTG
  TTTCAAAATG TTAATGAAGA CATTTGGGCG CCATCCTTTC TAGAGACGCT CCTGACAGTC
  AGTGCCGGAT TGCTCTGTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377132782	MGP_WTSI_9_32504979	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261489567					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377132782	MGP_WTSI_9_32504979	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32608690 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21544	CpG island 21544	850 bp distal
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr206170	regulatory region 206170	within coordinates
Rr401307	regulatory region 401307	1318 bp downstream
Tssr84270	transcription start site region 84270	1708 bp downstream
Tssr84271	transcription start site region 84271	1689 bp downstream
Tssr84272	transcription start site region 84272	1675 bp downstream
Tssr84273	transcription start site region 84273	1619 bp downstream
Tssr84274	transcription start site region 84274	1578 bp downstream
Tssr84275	transcription start site region 84275	1299 bp downstream
Tssr84276	transcription start site region 84276	518 bp downstream
Tssr84277	transcription start site region 84277	383 bp downstream
Tssr84278	transcription start site region 84278	533 bp upstream
Tssr84279	transcription start site region 84279	853 bp upstream