rs261490543 SNP Detail

Summary

• ID
  rs261490543
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62493285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGAGGGC CGTCTGCATA
  GGGCCTTGAG AGACTCCGTG GATATGTTGT AAAAATAATG GGGTGCAGAA CGGCCCCAAT
  CATTACACTT TTGTAACAGC GTTTGTCTTT GAACGCGGTT TCGTGTGTGT TAGCGTAGAT
  GAGCCAGGCT CTCCACCACC CAGTTAGATT ATATAGGCCC GCTTTTTTTT TTTTTTTTTT
  W
  AATTTAAAAT AGAGACAGGG GCTCATTAAA TTGCCCAGGC TGGACTCGAA TTCTTGCGTC
  GGGTTCCTAA TCGATTACGA TTACAGGCCT GCACTGTCAG GTCTGACTAC ACATTTCACA
  CACTACACAC GTTCACAAAG GACTAATAAG TCAGGGAAGA CAACGAGGAC GGAAAACCGC
  GGAAAGGATG TCGAGTCCGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323704025	CHEV_11_62415961	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261490543					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62493285 () rs orientation: forward

Symbol	Name	Function Class
2410006H16Rik	RIKEN cDNA 2410006H16 gene	418 bp upstream
Cpgi3027	CpG island 3027	23 bp proximal
Rr246930	regulatory region 246930	within coordinates
Rr402627	regulatory region 402627	129 bp upstream
Snord49a	small nucleolar RNA, C/D box 49A	1001 bp upstream
Snord49b	small nucleolar RNA, C/D box 49B	627 bp upstream
Tssr102048	transcription start site region 102048	408 bp upstream
Tssr102049	transcription start site region 102049	498 bp upstream
Tssr102050	transcription start site region 102050	602 bp upstream
Tssr102051	transcription start site region 102051	656 bp upstream
Tssr102052	transcription start site region 102052	722 bp upstream
Tssr102053	transcription start site region 102053	988 bp upstream