rs261492442 SNP Detail

Summary

• ID
  rs261492442
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:82273358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTGTATTAA ACCCCCATTG TAGAAGGAAA
  ACAGAGACTT AAGGATAATT TGTCCTAATT GACATTGAGT CTTTCTCATA TGTTCAATTC
  ATGTAGACCA AATCAAATAa tatattaaca tatatatgta tatgtgtata tatatatatg
  Y
  atatatatat aATGATCATA TGCCAATGAA ACTGAAAGTA CCTTTAATAT TTTAAGATAC
  TTAATCTTCT AAGAAACAAC AAATGAAAGT TTATAATTTA TTCATGCCTT TGAACACAGT
  TCTATTTATA TCAAAGTTAT ATATTTATGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321587359	CHEV_5_82554536	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261492442					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:82273358 () rs orientation: forward

Symbol	Name	Function Class
1700031L13Rik	RIKEN cDNA 1700031L13 gene	798 bp upstream
Tssr51489	transcription start site region 51489	856 bp upstream
Tssr51490	transcription start site region 51490	839 bp upstream
Tssr51491	transcription start site region 51491	814 bp upstream
Tssr51492	transcription start site region 51492	788 bp upstream
Tssr51493	transcription start site region 51493	771 bp upstream