rs261502383 SNP Detail

Summary

• ID
  rs261502383
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143928281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTATTTAG CTAGGCATGC
  AGGCATATGT CTATAATCCC AGCCCTGAGA AGGCTGAGGC AGAGAGATCT TGAGTTTAAG
  TACTACTAGG TTATACAGTG AATCCCATGT AAACAAACAA ATAAGATAAA TATAAATATA
  CATACGTATA ACTCCTTTAA ATCTATTCTC AGAAAGGCAA CATCCGCTTT GAGAAGTCGC
  K
  GGGATTACCT GGTAAAGTCA CTGTTGATGT CCCCTAATAT CTTCATTAGA TCTGGGTGGA
  CGGATGTGAG TGACACACTG GGCGTTTTCC TCATGTGAAT TGTACTTTTC TCTGCTAAAT
  TCATGTGGTT GAAGTAGATG AACTTAAACT GGGGCTCCTT TTCAGACCTG TGCAGACATG
  ACATTGAGAT GACGACCACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321708907	CHEV_5_144752332	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261502383					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143928281 () rs orientation: forward

Symbol	Name	Function Class
Ccz1	CCZ1 vacuolar protein trafficking and biogenesis associated	within coordinates
Tssr54387	transcription start site region 54387	1144 bp downstream
Tssr54388	transcription start site region 54388	1168 bp downstream
Tssr54389	transcription start site region 54389	1247 bp downstream