rs261509116 SNP Detail

Summary

• ID
  rs261509116
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103590830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTACACA CAAAACTAAT
  GTAAAATTAA TGGCCAGAGT GAGGGATCTG ATAACGATCT AAAATTACTG GTTCCAAGAA
  ACGTTTAATA CATAAGGAAA GCATTATTGG AAAGAGAAAA TAAGATGAAT CGTATTGGGT
  TTTGTTGTTG TTGTTGTTTG CTTTGTTTTG TTTTTTCAAA CAGTCTCACT ATGCAGACCA
  R
  ACTGGCCTCG AGCTCCAAAA AATACTCCAG GCTCCACCTT CCAAGCGCTG GAATTAACGG
  TATACGCCAC CACAACCTGA TCGACAAGTC ATTTTCATTC GGCTGTATCC ATTCTTGTAC
  ACACAGCACC GGGTACTAAG CATCACGAGG TGCACTGTCA AATGTCCTGA CTGAGACAGC
  TAAATAGTGC AAATAAACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355099502	MGP_WTSI_2_103600642	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261509116					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355099502	MGP_WTSI_2_103600642	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103590830 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11984	CpG island 11984	239 bp proximal
Gm75186	predicted gene, 75186	901 bp upstream
Nat10	N-acetyltransferase 10	within coordinates
Rr55318	regulatory region 55318	within coordinates
Rr367263	regulatory region 367263	712 bp upstream
Tssr19170	transcription start site region 19170	928 bp upstream
Tssr19171	transcription start site region 19171	992 bp upstream
Tssr25490	transcription start site region 25490	437 bp downstream
Tssr25491	transcription start site region 25491	593 bp downstream
Tssr25492	transcription start site region 25492	678 bp downstream
Tssr25493	transcription start site region 25493	693 bp downstream