rs261515314 SNP Detail

Summary

• ID
  rs261515314
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114116678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTATGTAT TCATTCCCTT
  ACTGGGGAAG TTTAAGTTGT TTCTGGGTTT TTCAGTTCAT AAACGAAGCT GGGACTGAAT
  AGCTTTGAGT ATGTTTACAT AGGTACACAT GCCGGCATTT CCGAAGTAAG ACTGGACTGT
  ACAATTGAAG CTCCTGGGGA CCTAGGGTCC AAGCATGGAG CCTAGTGGAT ACTCACCTTT
  Y
  GGTGTGGAGA TGGTTAATGG CTCTCTGCGG TTCCCCTTCT TCCTGAGCAG GTGCGTGATG
  GAGAGCACAC TTTGAAACTT TGCTCATCTA GAAAGTGGGA TGGATAGCCC TAGACCCTGC
  CTCATAGTGA GGACAAGGCT TAATGAAGGA TTTCGAGCGT CGCCTGCCCC TTGCTGTCTT
  CCTCACTCCT GACAGGCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324533149	CHEV_13_114770350	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261515314					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114116678 () rs orientation: forward

Symbol	Name	Function Class
Arl15	ADP-ribosylation factor-like 15	within coordinates
Rr486630	regulatory region 486630	1903 bp distal
Rr486631	regulatory region 486631	1204 bp proximal
Tssr121196	transcription start site region 121196	1339 bp upstream