rs261527400 SNP Detail

Summary

• ID
  rs261527400
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:47987558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGAAAGGG TCGATCGAGT
  AAGTAAAATC TCTACAGAAA AATGAATGAC CCTGGTGTTT CGGTTTCTGT CCATAATGCT
  CAGTGAAGTC ACTCCTCAGT CTGTTGTTGA GGGATATACA ATATTTTTGA GCATCCTCAT
  GTCAATCAGA ATTTTGTAGT TTGTGTTTTG GTTTTTGTTG TTGTTGTTAT TGGTGGTGGT
  R
  GTTTGTTTGC TTTGCAAAAT ATCAAAGTCG GAAGGAATAG GTCCTATAAA TCACCTGTCA
  TTGAACTTTC CAACTCTGTA ATGTGTCCAG ATGAAAAAGG AAAAAGAGCA CCCTAGCTTG
  GTGAACGTGG TAGAGTAAGG ATTAGAAGAT AAATCCCACC TGGCGGTAGT GGTGTACGCC
  TTTAATCCCA GTGTTAGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374563456	MGP_WTSI_8_48619877	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261527400					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374563456	MGP_WTSI_8_48619877	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:47987558 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20329	CpG island 20329	269 bp distal
Gm63731	predicted gene, 63731	978 bp downstream
Rr186609	regulatory region 186609	within coordinates
Rr368533	regulatory region 368533	720 bp downstream
Rr400846	regulatory region 400846	832 bp downstream
Rwdd4a	RWD domain containing 4A	within coordinates
Trappc11	trafficking protein particle complex 11	1053 bp upstream
Tssr77336	transcription start site region 77336	814 bp downstream
Tssr81236	transcription start site region 81236	1111 bp upstream
Tssr81237	transcription start site region 81237	1087 bp upstream
Tssr81238	transcription start site region 81238	1046 bp upstream