rs261533603 SNP Detail

Summary

• ID
  rs261533603
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151966649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGACCCAGA TAGGAAGGCT GTATCCTGCC
  TGGCCTTCCA GGGACCTGTC ACTTGGTTGA TGGTGTGGGT GCCGACAGAG GCTTCACTAG
  GATTGAGGCA GGAACCGGGA GAGGAGAAGT CTGTCAGGCA GATCGACAGC TCTGGGACGC
  R
  CAGAGGGGTT GTGGCTGCTT GGAGCTAACT CGGGAAGGCT GCACAGCCTC GCCCTACCCC
  TCCCTGGCCG CCGGGAAGAG CCAGCCGCAG CCAAGGCCGG GAGACCCACC TCTGAGCGTC
  TCCACCTTGT CTCCCAGCTG CAGCGCCTGC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320062296	CHEV_1_153938028	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261533603					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151966649 () rs orientation: forward

Symbol	Name	Function Class
1700025G04Rik	RIKEN cDNA 1700025G04 gene	Intron
Cpgi853	CpG island 853	within coordinates
Rr420417	regulatory region 420417	784 bp distal
Rr420418	regulatory region 420418	283 bp distal
Tssr14207	transcription start site region 14207	731 bp upstream
Tssr14208	transcription start site region 14208	689 bp upstream
Tssr14209	transcription start site region 14209	644 bp upstream
Tssr14210	transcription start site region 14210	591 bp upstream
Tssr14211	transcription start site region 14211	566 bp upstream