rs261537454 SNP Detail

Summary

• ID
  rs261537454
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133989572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATGGGGT CTGTTGAATA
  GGACTTTCTA AGCACACGAT TTCAGCCATA GTTCAGTCTC TAACAGATGG GAAGACCTTT
  GCAAAATACT CTTTTGCCCC CAAGCCCTAT TTCAGTTTCT ATTGAATAGC CTTAAATGTG
  TGCACACTGA CCTGGGGATG ATGATAATGT CAGTATTTAA TAGCAGCTAC TGTGAGCTTC
  R
  GATGAACCAG CACTGTCTGG ATTCTTCTAT CCGCCAAACC CACAACAGAA TTAACCAGAG
  AAACTTTTAT CCCATGGCAA AACAATTGAT AAGCTTCGTA ACACCTACTG TAATGAGGCA
  TGCAGGTAAT ATGTCTTTTC CTGGGGACCC CTTCCAATCT TGATCATTAA GTTGTAATCT
  TCCAGCCAGA TGTGGTAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351510350	MGP_WTSI_1_135958411	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261537454					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351510350	MGP_WTSI_1_135958411	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133989572 () rs orientation: forward

Symbol	Name	Function Class
Cpgi758	CpG island 758	395 bp distal
Cpgi759	CpG island 759	1293 bp proximal
Gm19497	predicted gene, 19497	887 bp upstream
Gm57140	predicted gene, 57140	98 bp downstream
Rr1740	regulatory region 1740	within coordinates
Rr12446	regulatory region 12446	1772 bp distal
Tssr8846	transcription start site region 8846	744 bp downstream
Tssr8847	transcription start site region 8847	727 bp downstream
Tssr8848	transcription start site region 8848	684 bp downstream
Tssr8849	transcription start site region 8849	1619 bp upstream
Tssr8850	transcription start site region 8850	1686 bp upstream
Tssr13763	transcription start site region 13763	1019 bp upstream
Tssr13764	transcription start site region 13764	961 bp upstream
Tssr13765	transcription start site region 13765	875 bp upstream
Tssr13766	transcription start site region 13766	1448 bp downstream
Tssr13767	transcription start site region 13767	1481 bp downstream
Tssr13768	transcription start site region 13768	1521 bp downstream
Tssr13769	transcription start site region 13769	1532 bp downstream