rs261539392 SNP Detail

Summary

• ID
  rs261539392
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48663111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGGGTACC TAGGTCAGCA
  ATCCCATGGC GTATAAAAGC ATCTCATCTG GCCAGGTCCT GGAACCTTTC CTGAGATTCT
  GGTGAGTCGG TCAGCTCTGT GGGACTCTCT CTTCTTTTCT AAACATCTAG AACAGTTATA
  GTACAGCTAC TTCTGTTGAG CTCTCCCTGC TCTCTCCAGA ATATGTCCTT TCCCTCACAG
  Y
  CACCCAAGAG CTCAGGGATC TCATCTTTGC TCTTTCCCTC CAGCCCCAGG ATGCCAACTT
  TGAATAGGAT GAAGACTACA ACTTGTTCCC TTCTCATCTG CATCTCCCTG CTCCAGCTGA
  TGGTCCCAGT GAATACTGAT GAGACCATAG AGATTATCGT GGAGAATAAG GTCAAGGAAC
  TTCTTGCCAA TCCAGGTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396216279	MGP_WTSI_16_48842861	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261539392					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396216279	MGP_WTSI_16_48842861	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48663111 () rs orientation: forward

Symbol	Name	Function Class
Retnla	resistin like alpha	within coordinates
Tssr138680	transcription start site region 138680	261 bp downstream
Tssr138681	transcription start site region 138681	168 bp downstream
Tssr138682	transcription start site region 138682	117 bp downstream
Tssr138683	transcription start site region 138683	87 bp downstream
Tssr138684	transcription start site region 138684	53 bp downstream
Tssr138685	transcription start site region 138685	12 bp downstream
Tssr138686	transcription start site region 138686	95 bp upstream
Tssr138687	transcription start site region 138687	136 bp upstream
Tssr138688	transcription start site region 138688	795 bp upstream
Tssr138689	transcription start site region 138689	1423 bp upstream
Tssr138690	transcription start site region 138690	1481 bp upstream
Tssr138691	transcription start site region 138691	1518 bp upstream